Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp1625 |
Symbol | tISRSo16- |
ID | 1223937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 2046984 |
End bp | 2047631 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637241488 |
Product | remnant of ISRSO16-transposase ORFB protein |
Protein accession | NP_523184 |
Protein GI | 17549844 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCAAG CAGGGGATCA GCGAATTCGG AGCTACGCCG GATGCGGCAA CTCGAGGAAG AGAAAGCGAC TCGTCGGCAT TGCTTGCACG CATCAAAGAG ATTGCGGCCA CTACGGCTAT CACCGTGTGC ACGTGATGCA GCAGCGGGAG AGCTGGAAAG ACAATCACAA ACGCGTCTAT CACCTGTATC GAGCGGAAGG CTTGTCGCTG CGGCATAAAC GCCCCAAGTG CAACAAGTCG GCGCGGCTAC GCCAGCCCAA GAGCATTGTC ATGGGCATCA ACGAAATCTG GAGCATGGAC TTTGTATCCG ACGCGTTGCT CGACGGCCAG CGCTTGCGCG CGTTGACCGT GGTGGACAAC TACACCAGGG AAAGCCTGGC CATCGAAGTC GGCCAAAGCC TGAAGGGGAA AGACGTTGTG CGAGTGCTCG ATGCCGTTGT TGCCCAGCAT GGCACGCCTC AAACCATCAA GGTGGACAAT GGCACCGAGT TCATCTCGAA GGCGATGGAC CGATCGCGAG GCAATCTCAT ATCGATTGGT CGTCATGGGT TGCTCTCCTT CTGCCCGAGG CCGCTTGGTC AACCAGTCAC GCAAGAAGTT GACGAACCGT GTCCAGCGCT AGGACCAGTC GCATGGGCTG GGTCGTGA
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Protein sequence | MPQAGDQRIR SYAGCGNSRK RKRLVGIACT HQRDCGHYGY HRVHVMQQRE SWKDNHKRVY HLYRAEGLSL RHKRPKCNKS ARLRQPKSIV MGINEIWSMD FVSDALLDGQ RLRALTVVDN YTRESLAIEV GQSLKGKDVV RVLDAVVAQH GTPQTIKVDN GTEFISKAMD RSRGNLISIG RHGLLSFCPR PLGQPVTQEV DEPCPALGPV AWAGS
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