Gene RSc2775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2775 
SymbolpopW 
ID1221622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2985681 
End bp2986823 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content63% 
IMG OID637239176 
ProductHARPIN-like protein 
Protein accessionNP_520896 
Protein GI17547494 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.396388 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATCC AGATTGATCG CCCGAACAAC CATTTCCAGA CGCCCTCGAC GTGGAATCAC 
GATGCGGGTT CCAGTATCGA TACCAGCCAG CTCCAGCGCG CAGTACAACT GCTCGACCAG
GTCTTGCAGC AGCTCGAAGC GCGCAAGCTG TTCGGGAACA TGCTGAACCA GCCGGGCGCC
GACAACGCCG GCCAGAACCA CGCTGGCGGC CACGGCGGCG GTCATCATGG CGGCTCGAAC
GGGTTCGGTG AAAACGGCCG CTTCGGTTCG CCGCACGCCA ATTCGCCTGC GCAGCCGGAC
CTCGAACTGC CGGCCAACAA GCCCAACAAC GGCAAGCACA ACACTTCGGC TTCCACGCCG
GACACGCAGA CGGCGCCGTC TTCCACTTCG CCCACGACCG GCACGTCCCC GACGCCCACG
TCCACCTCCG CGACCGAGGG CAAGGTGGCC TACGGCGTCA AGCCGCCCGA GCCGACCGGC
GTGGTCGACG TCAGCAAGCC GATCGTCGTC AAGGCTGGCG AGACGTTCGA CGGCGGCGGC
AAGTACTACC GCCCGACCAA GGAGATGGGC GACGGTTCGC AGAACGAGCA CCAGAAGCCG
CTGTTCATTC TGGAGCCCGG CGCGACGCTC AAGAACGTGC AGTATTCCGG CGGCGACGGC
ATCCACCTGC TGGGCAGTGC CAAGCTGGAC CGCGTCGTGA ACCGCCAAGT GGGCGAAGAT
GCCATCACCA TCGATGGCGC CAAGAACCGC GCGCATGATG CCAAGATCGC CGGGATCGAT
CCGGCGTCGA TCCCCGGAGG AACGCCCAAA GTGGAGATCA CCAACAGCGC CTTCTATGGC
GCCAAGGACA AGCTCGCTCA GATCAACGGC GACGTTGACC TGCAGGTGAA AGGCATGTAT
GTCAACGGCG CTGGCAAGGT CTTCCGTACC AACGGTGGTG ATACGCAGAT CAAGGCGACG
GTCAACGTCC AGGATTCGAA TTTCCAGAAC GTGTCGGAGG CGGTTTTCCG GACCGATTCC
AAGTTCTCGA CTGCGTCGTT CTCGGACGAT GTGAAATCGG ATGCGCCCTT CGATGGACTG
GCTCCCGACA AGAGCCAAGT CACAGGCACC AACAAGGTGA GCTACAAGGC CTACTCGGGC
TGA
 
Protein sequence
MSIQIDRPNN HFQTPSTWNH DAGSSIDTSQ LQRAVQLLDQ VLQQLEARKL FGNMLNQPGA 
DNAGQNHAGG HGGGHHGGSN GFGENGRFGS PHANSPAQPD LELPANKPNN GKHNTSASTP
DTQTAPSSTS PTTGTSPTPT STSATEGKVA YGVKPPEPTG VVDVSKPIVV KAGETFDGGG
KYYRPTKEMG DGSQNEHQKP LFILEPGATL KNVQYSGGDG IHLLGSAKLD RVVNRQVGED
AITIDGAKNR AHDAKIAGID PASIPGGTPK VEITNSAFYG AKDKLAQING DVDLQVKGMY
VNGAGKVFRT NGGDTQIKAT VNVQDSNFQN VSEAVFRTDS KFSTASFSDD VKSDAPFDGL
APDKSQVTGT NKVSYKAYSG