| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2582 |
|---|
| Symbol | trbD |
|---|
| ID | 1221429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2789834 |
|---|
| End bp | 2790106 |
|---|
| Gene Length | 273 bp |
|---|
| Protein Length | 90 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637238983 |
|---|
| Product | conjugal transfer TrbD transmembrane protein |
|---|
| Protein accession | NP_520703 |
|---|
| Protein GI | 17547301 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGC CGGACAGCTT CGCGGCCGGC TTCGAGGTGC CGCTACATCG CTCGCTCACC
GAGCCGATCC TCATGGGCGG CGCACCGCGC ACCGTGGCAA TTGCCAACGG TACGCTGGCC
GCCGCCGTCG GGCTGGGCCT GCAACTCTGG ATTCCCGGTG TCGTGCTCTG GATCGTCGGT
CACTCGATGG CCGTGTGGGG CGCGCGTGTT GATCCGCAGT TCATGCAGGT CTTCGCCCGG
CACATCAAGC ACAAGTCGCT GCTGGACGTA TAG
|
|---|
| Protein sequence | MSGPDSFAAG FEVPLHRSLT EPILMGGAPR TVAIANGTLA AAVGLGLQLW IPGVVLWIVG
HSMAVWGARV DPQFMQVFAR HIKHKSLLDV
|
|---|
| |