| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2002 |
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| Symbol | prpD |
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| ID | 1220842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 2178619 |
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| End bp | 2180085 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637238396 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | NP_520123 |
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| Protein GI | 17546721 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.213723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCGCGC CGGCTGCGAA CATCCGCCCG AAACCCGACA AGGTCATCGT CGACATCGTC
GACTACGTGA CCCGGTTCAA GGTCGACAGC AAGGCCGCCT ATGAAACGGC GCGCCACTGC
CTGATCGACA CCTTGGGCTG CGGGCTGGAG GCGCTGTCGT ATCCGGCGTG CACCAAGCTC
CTGGGGCCCA TCGTGCCGGG AACCGTCGTG CCGAACGGCG CGAAGGTCCC GGGCACCCAA
TTCCAGCTCG ATCCGGTGCA GGCGGCGTTC AACATCGGCG CCATGATCCG CTGGCTGGAT
TTCAACGACA CGTGGCTGGC CGCCGAATGG GGCCATCCGT CGGACAACCT CGGCGGCATC
CTGGCCGTCG CGGACTGGCT GTCCCGCACG AACCTCGCCG GCGGCAAGAA GCCGCTCGCC
ATGAGGGACG TGCTGACCGC GATGATCAAG GCCCACGAGA TCCAGGGCTG CATCGCGCTC
GAAAACGCAT TCAACCAGGT GGGGCTGGAC CACGTCGTGC TGGTCAAGGT CGCCACCGCC
GCGGTGGTCG GGCAACTGCT CGGGCTGTCG CGCGAGGCGC TCATCAACGC CGTGTCGCTG
GCGTGGGTCG ATGGCCAGGC GCTGCGCACC TACCGCCATG CCCCGAACAC GGGTAGCCGC
AAGTCCTGGG CGGCGGGCGA CGCCACCAGC CGCGGCGTGC GCCTGGCGCT GATCGCCAGG
ACCGGCGAGA TGGGCTATCC CTCCGCCCTC ACCGCCAAGG GCTGGGGCTT CTATGACGTG
TCCTTCAAGG GCCGGCCGTT CAGGTTCCAG CGCAAGTACG GCACGTACGT GATGGAAAAC
GTGCTGTTCA AGATCAGCTT CCCGGCCGAG TTCCATGCGC AGACCGCCGC CGAAGCGGCC
ATGACACTGC ACAGGGCCAT TGCCAAGGCC GGCAAGACCG TCGATGACAT CGAGCAGATC
ACAATCCGCA CGCACGCAGC GGCAATCCGC ATCATCGACA AGCAAGGCCC GCTGAACAAT
CCGGCGGACC GCGACCATTG CATCCAGTAC ATGGTCGCCG TGCCGCTCAT CTTCGGCCGC
CTGACCGCCG GGGATTACGA AGACACCGTC GCCCGCGACC CGCGCATCGA TGCGCTGCGC
AAGAAGATCG TCTGCGTGGA AGACCCGCAG TTCACCAAGG ATTACCACGA CCCGGAGAAG
CGTTCGATCG CCAATGGGAT CACCGTCCGG TTCAAGGGCA AGACGGCGCC CAACGAAAGG
GCGCTCAAGG AGGTCGTGGT GGAGTACCCG ATCGGCCACA GGCGGCGGCG CAAGGAAGGC
ATGCCGCTGC TGCTCGAGAA GTTCAGGACC AACCTGGCCC GCCGCTTTCC GGCCAGGCAG
CAGGACGCCA TCCTGCGCGC TTCGCTGGAC CAGAAAGCAC TCGAGGCCAT GCCGGTCAAC
GAGTATGTCG ATTTGTACGT GATTTGA
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| Protein sequence | MSAPAANIRP KPDKVIVDIV DYVTRFKVDS KAAYETARHC LIDTLGCGLE ALSYPACTKL
LGPIVPGTVV PNGAKVPGTQ FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LAVADWLSRT NLAGGKKPLA MRDVLTAMIK AHEIQGCIAL ENAFNQVGLD HVVLVKVATA
AVVGQLLGLS REALINAVSL AWVDGQALRT YRHAPNTGSR KSWAAGDATS RGVRLALIAR
TGEMGYPSAL TAKGWGFYDV SFKGRPFRFQ RKYGTYVMEN VLFKISFPAE FHAQTAAEAA
MTLHRAIAKA GKTVDDIEQI TIRTHAAAIR IIDKQGPLNN PADRDHCIQY MVAVPLIFGR
LTAGDYEDTV ARDPRIDALR KKIVCVEDPQ FTKDYHDPEK RSIANGITVR FKGKTAPNER
ALKEVVVEYP IGHRRRRKEG MPLLLEKFRT NLARRFPARQ QDAILRASLD QKALEAMPVN
EYVDLYVI
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