| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1782 |
|---|
| Symbol | |
|---|
| ID | 1220620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1917697 |
|---|
| End bp | 1918737 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637238174 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_519903 |
|---|
| Protein GI | 17546501 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0354] Predicted aminomethyltransferase related to GcvT |
|---|
| TIGRFAM ID | [TIGR03317] folate-binding protein YgfZ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000345252 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACG TCTTCCAGGA TTTCGTCGAT ACGCTCAGCT TTCCCCCGCT CGACGTGCAG
TTCACCCATG CCGCGCAAGG CAGCGTGCTG TGCGCGCCGA CCAACCTGGC CCGCATTGCC
GTCGAAGGCG CCGATGCGGC CGAATTCCTC CACAACCAGC TGACCAACGC GGTCACCGGC
CTGGGCCTGG CACAGGCGCG GCCGGCCGGC TACTGCTCGC CCAAGGGACG GCTGCTGGCC
ACGCTGCTCC TGTGGCGCCA GGCCGATACC ATCGTGCTGC AGACCGACAA GCTGGTCGCG
CCCGCGATCA CCAAGCGCCT GTCGATGTTC GTGCTGCGCG CCAAGGCCAA GCTGCGCCCG
ATGGACGAGT TCATCGCCAT CACCGTCGCC GGGCCGGACG CGGCCGATGC GCTGCGCGCG
GCCGGCGCCG TGTTGCCCGA ATCCGATGCG CCCTATGCCG TCGCGCAGCA GTCCGCCACG
GTGGGCCAGC AGGTCGGCGC GGTGGTCCGC CTGCCGGATG CCGGCAACCG GGCGCGCTAC
CAGTGGCTGG TGCACGCGGA GCACTTCCAG CACGCCTGGA AGACGCTGTC GTCGCGGCTG
GCGCTGATCG GCACCGAAGT GTGGGACTGG CTCGGCCTGC AGGCGGGTGT GCCATCGATC
ACGCTGTCGA CGCAAGAGCA GTTCGTGCCG CAGATGGTGA ACCTGGAGCT GATCGGCGGC
GTGGATTTCC GCAAGGGCTG CTATCCGGGC CAGGAGGTGG TGGCGCGCAG CCAGTACCGC
GGCACGCTCA AGCGGCGCAT GCAGCGGGCG CACGTCGATG CGCCCACCTC GGCCGGCGCC
GAAGTCTTCA GCGCGGCCGA CCCGAACCAG CCATGCGGCA TGGTGGTCAA CGCCGCGATG
GCGCCGGACG GCGGCACCGA CCTGCTGGTC GAGCTCAAGC TGGATGCGCT CGACACGGTC
ATCCACCTGG CCACCGCCGA TGGGCCGGTG CTGACGCTGC AACGCCTGCC GTACGCGATT
CCCGTCGCGG AAAGCGCCTG A
|
|---|
| Protein sequence | MNDVFQDFVD TLSFPPLDVQ FTHAAQGSVL CAPTNLARIA VEGADAAEFL HNQLTNAVTG
LGLAQARPAG YCSPKGRLLA TLLLWRQADT IVLQTDKLVA PAITKRLSMF VLRAKAKLRP
MDEFIAITVA GPDAADALRA AGAVLPESDA PYAVAQQSAT VGQQVGAVVR LPDAGNRARY
QWLVHAEHFQ HAWKTLSSRL ALIGTEVWDW LGLQAGVPSI TLSTQEQFVP QMVNLELIGG
VDFRKGCYPG QEVVARSQYR GTLKRRMQRA HVDAPTSAGA EVFSAADPNQ PCGMVVNAAM
APDGGTDLLV ELKLDALDTV IHLATADGPV LTLQRLPYAI PVAESA
|
|---|
| |