| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1779 |
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| Symbol | |
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| ID | 1220617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1914456 |
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| End bp | 1916150 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637238171 |
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| Product | activation/secretion signal peptide protein |
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| Protein accession | NP_519900 |
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| Protein GI | 17546498 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000346081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTCTG CTGTTTTACG TGCCGCAGTT CTCTGTGCCG GTACGGCAAG TTCGTTTGCG
CTCGCGCAAG TCGCCCCGGC GCCTGTCAGC GGTCCCGGTC CTGAAGTCCA ACGCCTGCAA
GAGCAGCAAG CCGACCAAGC CCGCGATCGC GCCAACGCCC GCCCCGACGT CTTCACGCCG
CCTGCGCCAA CTCAGGCGAT CTCACTGTCT GCGTTGCCCA AGGAAACACC GTGCTTCCCC
ATCCAGGGCA TCGTTCTCGA AGACAACGTC TTCAACTGGC TGCCCTACCT GCTCCAGCCC
GTCAACGGCC AGTGCGTGGG CAAGCAGGGG TTGGAAGCCA TCGAGCTTCA GGTCAACAAC
GCGCTCATCG AGCACGGCTA TGTCACCTCG CGCGTGCTGA TTCCGCAGCA GAACCTGGCC
GAGGGCGCGC TGCGGCTCAA GGTGTTGCCC GGCCGCATTG GCGCCGTGCG CAATGCGTCG
GATGACAACA TAGGCTGGGC ACGCATGGCC CTGCTGGCCG GGCCGGGCGA TCTGCTGAAC
CAGCGCGACC TGGACCAGGC GCTGGAAACC GTCCGCCGTC TGCCGGGCCA GTCGGAGGCG
AGTTTCGACA TCGTGCCCGG CGCGCAGGTC GGCGAATCGG ACATCGTGCT CAAGCCAGGC
ACCGAGAAGC GCTGGCACGC CACGCTGTCG GCGGACAACA CCGGCATGAA GAACACCGGC
AAGTACCAGA TGAGCGGCTC GCTGGTCATC GATTCGCCGC TGCATCTGTA TGACCAGTTG
GCGATTTCCG CATCGTCCAA TACGGACCGT GGCGCGGCCA CGCAGGGCAC GCGCTCGTAC
AGCATCAACT GGAGCGTGCC GGTCGGCTAT GCGACGGTGT TCGTGGGGGC CAACCGGTCG
CGCTATCGCC AGACCGTGGC CGGGTTCGAA GACCCGATCG TCTACAGCGG CCAGAGCTCC
GAGGTGAACC TGGGGATCAG CGGGGTGCTG CATCGCGATG CCACGTCCCG CACCGGCGCG
CAGTTCAAGG TCTTCCGCAA GATCAACCGC AACTACCTGG ACGACACGGA GATCGAGGTG
CAGCGCCACG ATGTGGTGGG CTACGAGGCA TCCATGTCGC ACCGGCACTA TGTCGGGCCG
GTGGCGCTCG ATGGCGGGAT CGCATGGCGT GAAACGCTGC CGGATCACTC CAACGTGCCG
GGCGTGGTGG TGGGCGACAC CACCTATGGC GGCCGCTCGC AGATCGAAAC CGCGAATGCG
AGCCTGTACT GGCCCTTCAA GGTCGCAAGC CAGGTCTTCG AGTTCAACAG CAACTGGGCC
ATTCAGCATG CCCGCACGCG CGTGCTGCCG AGCGATTACT TCACGATCGG CAACCGCTAC
ACCGTGCGCG GCTTCGACGG CCAGTTGACG CTGGCGGCCG AGGATGGCTG GTACTGGCGC
AACGAACTGG CGTGGCGTGT GGCCGGACAG GCCATCTACG GTGGCATCGA TGTGGGCAAG
GTGCATGGGC CGAGCGCCGA ATCCTTGCTC GGCGAGCAGT TGGTCGGTGC CGTGATCGGT
GTGCGCGGGC GGGTGCCGTC GGGGCGCTAT GCGACGGTCA ACTACGATCT GTCGTTCGGC
TGGCCGCTGT CCAAGCCGGC GGGCTTCCGC TCCGAGCGGC CGGCGGTGAT GGCGCAGGTG
GGTGTCGAAT TTTAG
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| Protein sequence | MSSAVLRAAV LCAGTASSFA LAQVAPAPVS GPGPEVQRLQ EQQADQARDR ANARPDVFTP
PAPTQAISLS ALPKETPCFP IQGIVLEDNV FNWLPYLLQP VNGQCVGKQG LEAIELQVNN
ALIEHGYVTS RVLIPQQNLA EGALRLKVLP GRIGAVRNAS DDNIGWARMA LLAGPGDLLN
QRDLDQALET VRRLPGQSEA SFDIVPGAQV GESDIVLKPG TEKRWHATLS ADNTGMKNTG
KYQMSGSLVI DSPLHLYDQL AISASSNTDR GAATQGTRSY SINWSVPVGY ATVFVGANRS
RYRQTVAGFE DPIVYSGQSS EVNLGISGVL HRDATSRTGA QFKVFRKINR NYLDDTEIEV
QRHDVVGYEA SMSHRHYVGP VALDGGIAWR ETLPDHSNVP GVVVGDTTYG GRSQIETANA
SLYWPFKVAS QVFEFNSNWA IQHARTRVLP SDYFTIGNRY TVRGFDGQLT LAAEDGWYWR
NELAWRVAGQ AIYGGIDVGK VHGPSAESLL GEQLVGAVIG VRGRVPSGRY ATVNYDLSFG
WPLSKPAGFR SERPAVMAQV GVEF
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