| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1642 |
|---|
| Symbol | mfd |
|---|
| ID | 1220477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1764304 |
|---|
| End bp | 1767777 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637238031 |
|---|
| Product | transcription-repair coupling factor protein |
|---|
| Protein accession | NP_519763 |
|---|
| Protein GI | 17546361 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.250538 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTGCT TTGCCTTGCC GACCGATTCC CCAACGTTTC TCATGTCCGA TCTCTCGCTT
TCCGCCCTGC CGATCGTCAA GCCCGGCCAG CGCTTCGTCT TCAGCGGCCT GCAGGGCTCG
GCCGATGCGC TGCTGCTGGC GCGCTACCTG GCGCAGCACC GCGACGCCGT GCCGATGCTG
GCGGTGGTCT GCGCCAACGC CGTCGATGCC CAGCGGCTGG CCGACGAGCT GCGCTGGTTC
GCCCCGCAGG CGCGCGTGAA GCTGCTGCCG GACTGGGAAA CGCTGCCGTA CGACAACTTC
TCGCCGCACC AGGACCTGAT CTCCGAGCGC CTGGCGACAC TGCACGACCT GCAGGGCGGC
GCGTGCGACC TCCTGCTGGT GCCGGCCTCC ACGGCGCTGC AGCGGATCGC GCCGCCGTCG
TTCCTGGCGG CCTATACGTT CTTCTTCAAG AAGGGCGAGC GGCTGGATGA GGCCGCGCTC
AAGGCGCAGT TCACGCTGGC CGGCTACGAG CACGTCAGCG CCGTGATGCG GCCCGGCGAA
TACAGCGTGC GCGGCGGCCT GATCGACCTG TTCCCGATGG GCTCGCCGAT GCCCTACCGG
CTCGACCTGT TCGGCGACGA GATCGACACC ATCCGCGCCT TCGACCCCGA CACGCAGCGC
AGCCTGTACC CGGTGAACGA AGTGCGCCTG CTGCCGGGCC GCGAATTCCC GATGGACGAG
GCCGCGCGCA CCGCCTTCCG CGGCCGCTGG CGCGAAGTGT TCGAGGGCGA CCCGACGCGC
GCGCCCATCT ACAAGGACAT CGGCAACGGC GTGCCCTCGG CCGGCATCGA GTACTACCTG
CCGCTGTTCT TCGAAACCAC CGCCACGCTG TTCGACTACC TGCCGGCCAG CGCGCACCTG
GCCCTGGTCG GCGACATCGA AAGCGCGGTG CGGCGCTTCT GGGCCGACAC CACGCAGCGC
TACGGCTTCA TGCGCCACGA CCGCGACCGC CCGCTGCTGG CGCCGTCCGC GCTGTACCTG
GACGAAGAGG CCTTCTTCAT CGCCGCCAAG CCGCATGCCC GGCTGGTGCT GCGCGCCGAG
CCGGGCGAGG CGCCGCTGTC GCTGCCGCTG CCCAGCGTGG CCGTCAACCG CCGCGCGGAA
GACCCGCTCG TCAACCTCGA ATCGTTCCTG ACGCGCGGCA ACTGCCGCGT GATGATCTGC
GCCGAATCGG CCGGCCGGCG CGAGACACTG GCGCAGATGC TGGCCGCCAG CGGCCTGCAC
CCCGAAGGCG TGGCCGACTG CGCCGACCTG ATGGGCGGCG ACGCCCGCTT CGTGCTCGGC
GTGGCGCCGC TGTACCAGGG CTTCATCCTG GGCGACGAGC GCATCGCCTT CATCACCGAG
ACCGAGCTGT ACGCCCAGGC CCTGCGCCGC GGCGGGCGCC GCAAGCAGGA GCAGGCCACC
GCCGTCGACG CCATGGTGCG CGACCTGGCC GAGTTGAAGA TCGGCGATCC GGTGGTGCAC
AGCGAGCACG GCATCGGCCG CTACCAAGGC CTGGTCTCGA TCGACATGGG CAACGGCGAG
GAAGAGTTCC TGCACCTCGA CTACGACAAG GGCAGCAAGC TCTACGTGCC GGTGCACCAG
TTGCACGTGA TCTCGCGCTA CTCGGGCGCC GATCCCGATA CCGCGCCGCT GCACCAGCTC
GGCTCCGGCC AGTGGGACAA GGCCAAGCGT AAAGCCGCGC AGCAGATCCG CGACACCGCC
GCCGAGCTGC TGAACCTGTA TGCCCGCCGC GCCCTGCGCC AGGGCTTCGC CTTCCCGCTC
GCGCCCAACG ACTACGAGGC CTTCGCCGAG AGCTTCGGCT TCGACGAGAC GCCCGACCAG
GCCGCCGCCA TCACCGCCGT GATCGCCGAC ATGACCTCGG GCAAGCCGAT GGACCGGCTG
GTGTGCGGCG ACGTCGGCTT CGGCAAGACC GAGGTCGCGC TGCGCGCTGC CTTCGTGGCC
GTGATGGGCG GCAAGCAGGT CGCCATGCTG GCGCCGACCA CGCTGCTGGC CGAGCAGCAC
TACCAGACGC TCGCCGACCG CTTCGCCGAC TGGCCGGTGC GCATCGCCGA GATCTCGCGC
TTCAAGAACA AGAAAGAGAT CGACGCCGCC ATCGAGGCCA TCAACGCCGG CACCATCGAC
ATCGTGATCG GCACGCACAA GCTGCTCTCG CCCGACGTGA AGTTCAACCG GCTGGGGCTG
GTCATCATCG ACGAGGAGCA CCGCTTCGGC GTGCGCCAGA AGGAGGCCCT CAAGACGCTG
CGCGCCGAGG TCGACGTGCT CACGCTGACC GCCACGCCGA TCCCGCGCAC GCTGGGCATG
GCGCTGGAGG GCCTGCGCGA CTTCTCCGTG ATCGCCACGG CGCCGCAGAA GCGGCTGGCC
ATCAAGACCT TCGTGCGGCG CGAGGAAGAC GGCGTGCTGC GCGAGGCCAT CCTGCGCGAG
CTCAAGCGCG GCGGCCAGGT CTACTTCCTG CACAACGAGG TCGAGACCAT CGAGAACAAG
CGGGCCAAGC TGGAAGAACT CGTGCCCGAG GCGCGCGTGG CGGTCGCCCA CGGCCAGATG
CACGAGCGCG AGCTGGAGCG CGTGATGCGC GATTTCGTTG CCCAGCGCGC CAACATCCTG
CTGTGCACGA CCATCATCGA GACCGGCATC GACGTGCCGA CCGCCAACAC CATCCTGATC
CACCGCGCCG ACAAGTTCGG CCTGGCGCAG CTGCACCAGC TGCGCGGGCG CGTCGGGCGC
TCGCACCACC AGGCCTATGC CTACCTGCTG GTGCACGATG CGGACGGCCT GACCAAGCAG
TCGCAGCGCC GGCTGGAAGC CATCCAGCAG ATGGAGGAGC TCGGCTCCGG CTTCTACCTG
GCGATGCACG ACCTGGAGAT CCGCGGCGCG GGCGAGGTGC TGGGCGACAA GCAGTCGGGC
GAGATCTCCG AGATCGGGTT CCAGCTCTAT ACCGACATGC TCAACCAGGC GGTGAAGTCG
CTCAAGGCCG GCAAGGAGCC CGACCTGATG GCGCCGCTGG CGGCCACCAC CGAGATCAAC
CTCGGCACCC CCGCCCTGCT GCCCAGCGAC TATTGCGGCG ACGTGCAGGA GCGCCTGTCG
CTGTACAAGC GCCTGGCCAA CTGCGAATCG GGCGAGACCA TCGACAACAT CCAGGAAGAG
CTGATCGACC GCTTCGGCAA GCTGCCGCCG CAGGCGCAGT CGCTGATCGA GACGCATCGG
CTTCGCATCG CCGCGGTGCC GCTGGGCATC CGCAAGATCG ACACCGGCGC CGATGCCGTC
ACGCTGCAGT TCGTGCCGAA CCCGCCGGTC GATGCCATCA AGATCATCAA CCTGGTGCAG
AAGAACCGCC AGATCAAGCT GGCCGGCCAG GACCGCCTGC GCATCGAGAA CATCCCCGCC
GAGACCGCCG CGCTGGCGCA GGCCATCCGC CAGACCATGC GGCAGCTGAC CTGA
|
|---|
| Protein sequence | MSCFALPTDS PTFLMSDLSL SALPIVKPGQ RFVFSGLQGS ADALLLARYL AQHRDAVPML
AVVCANAVDA QRLADELRWF APQARVKLLP DWETLPYDNF SPHQDLISER LATLHDLQGG
ACDLLLVPAS TALQRIAPPS FLAAYTFFFK KGERLDEAAL KAQFTLAGYE HVSAVMRPGE
YSVRGGLIDL FPMGSPMPYR LDLFGDEIDT IRAFDPDTQR SLYPVNEVRL LPGREFPMDE
AARTAFRGRW REVFEGDPTR APIYKDIGNG VPSAGIEYYL PLFFETTATL FDYLPASAHL
ALVGDIESAV RRFWADTTQR YGFMRHDRDR PLLAPSALYL DEEAFFIAAK PHARLVLRAE
PGEAPLSLPL PSVAVNRRAE DPLVNLESFL TRGNCRVMIC AESAGRRETL AQMLAASGLH
PEGVADCADL MGGDARFVLG VAPLYQGFIL GDERIAFITE TELYAQALRR GGRRKQEQAT
AVDAMVRDLA ELKIGDPVVH SEHGIGRYQG LVSIDMGNGE EEFLHLDYDK GSKLYVPVHQ
LHVISRYSGA DPDTAPLHQL GSGQWDKAKR KAAQQIRDTA AELLNLYARR ALRQGFAFPL
APNDYEAFAE SFGFDETPDQ AAAITAVIAD MTSGKPMDRL VCGDVGFGKT EVALRAAFVA
VMGGKQVAML APTTLLAEQH YQTLADRFAD WPVRIAEISR FKNKKEIDAA IEAINAGTID
IVIGTHKLLS PDVKFNRLGL VIIDEEHRFG VRQKEALKTL RAEVDVLTLT ATPIPRTLGM
ALEGLRDFSV IATAPQKRLA IKTFVRREED GVLREAILRE LKRGGQVYFL HNEVETIENK
RAKLEELVPE ARVAVAHGQM HERELERVMR DFVAQRANIL LCTTIIETGI DVPTANTILI
HRADKFGLAQ LHQLRGRVGR SHHQAYAYLL VHDADGLTKQ SQRRLEAIQQ MEELGSGFYL
AMHDLEIRGA GEVLGDKQSG EISEIGFQLY TDMLNQAVKS LKAGKEPDLM APLAATTEIN
LGTPALLPSD YCGDVQERLS LYKRLANCES GETIDNIQEE LIDRFGKLPP QAQSLIETHR
LRIAAVPLGI RKIDTGADAV TLQFVPNPPV DAIKIINLVQ KNRQIKLAGQ DRLRIENIPA
ETAALAQAIR QTMRQLT
|
|---|
| |