| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1365 |
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| Symbol | |
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| ID | 1220189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1454365 |
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| End bp | 1455828 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637237743 |
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| Product | putative multidrug resistance-like efflux transmembrane protein |
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| Protein accession | NP_519486 |
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| Protein GI | 17546084 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.816308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCT TCACGCCCAC GCTGGAAACC CTGCGCGCGC GCCATGGCGA GCGCTTCAAG
TGGCTGGTGC TGTTCACGCT GACGGTGGGC GCGGTGTCGT CGATCATTTC CGCCACCATC
GTCAACGTGG CGATTCCCGA TCTGAGCCGG CATTTCGTGC TGGGCCAGGA GCGCGCGCAG
TGGGTTTCGG CCAGCTTCAT GGTGGCGATG ACGCTGGCGA TGCTGCTCAC GCCGTGGCTG
CTGCTGCGCT TCGGGCTGCG GCGCACCTTC ATCGGCGCGC TGCTGTTGCT GGGCGTGGGC
GGGCTGGTCG GCGGGCTGTC GCCCACCTAC GGCGTGATGA TCGCCATGCG GGTGGTGGGG
GGCGTGGCGG CGGGCATCAT GCAGCCGCTG CCCAATATCC TGATCCTGCG CGTGTTTCCG
GAGCGCGAGC AGGGCAAGGC GTTCGGGCTG TTCGGCTTCG GCGTGGTGCT GGCGCCGGCG
CTCGGGCCCA GCCTTGGCGG CTTCCTGGTG GAGCTGTTCG GCTGGCGCTC GATCTTCTTC
GTGGTGGTGC CATTCACGCT GCTGGGCTGG GCGATGGCGC GCCGTTTCAT GGCGATCAAC
TCGTCGATGG CCGGCGAGCC CAAGCCGCTC GACTGGCGCG GCCTGCTGCT GGTGGGCGCG
GCGACGGTCG CGCTGCTCAA CGGCCTGGTC GAACTGCACG CCGATGTCAC GCGCGGCGTC
GCGCTGATGG CCGTGTCGGC GGTGTGCCTG GCGGTGTTCC TGTTCTGGCA GCGCCGCGTG
GAATCGCCGC TGCTCGATCT GCGGCTGTTC AGCTACCGGC AGTTCGCCAT GGGCGCCGTG
GTGGCGTTCA TCTACGGCGC GGGGCTGTAT GGCTCGACCT ACCTGTTGCC GGTGTACATG
CAGGTGGCGC TCGCCTACAC GCCGTCGAGC GCCGGGCTGG TGCTGCTGCC GCCCGGGCTG
GCGCTGGCCG CGACGATCGT CGTGGCCGGG CGCCTGACCA GCCGGATCGA GCCGTACCGG
CTGGTGTCGT TCGGGCTGGC GGCGCTGGCC GTGTCCTTCC TGCTGATGAC GACCAACACC
CGCGCCACCG GCTATCTGCT GCTGATCGGC ATCGCCGCGA TCGGGCGGGT CGGGCTGGGC
TTCGTGCTGC CGTCGCTGAG CCTGGGCGCC ATGCGCGGGG TCGATTTCAC GCTGATCCCG
CAGGGCTCCA GCGCCGTCAA CTTCCTGCGC CAGCTGGGCG GGGCGATCGG CGTGTCGGCC
ACGGGCATCT TCCTGCAATG GCGGCTGGCC GCGCGCGGCA TCGGTGCGGT GGGCGGCGTG
GCGGTGGACC CGGAGGCGCG CATCGTGGCG TGCGACGAGA CCTTCGTCTT TCTGGGCGTG
CTGTGCGCGC TGGCGGTGGC GGCGGCCTGG CGCATGCGCC GGCGCGAGCC GGCCGCCGTG
GTGTCGGCCG GCGTGGGGCC ATAA
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| Protein sequence | MATFTPTLET LRARHGERFK WLVLFTLTVG AVSSIISATI VNVAIPDLSR HFVLGQERAQ
WVSASFMVAM TLAMLLTPWL LLRFGLRRTF IGALLLLGVG GLVGGLSPTY GVMIAMRVVG
GVAAGIMQPL PNILILRVFP EREQGKAFGL FGFGVVLAPA LGPSLGGFLV ELFGWRSIFF
VVVPFTLLGW AMARRFMAIN SSMAGEPKPL DWRGLLLVGA ATVALLNGLV ELHADVTRGV
ALMAVSAVCL AVFLFWQRRV ESPLLDLRLF SYRQFAMGAV VAFIYGAGLY GSTYLLPVYM
QVALAYTPSS AGLVLLPPGL ALAATIVVAG RLTSRIEPYR LVSFGLAALA VSFLLMTTNT
RATGYLLLIG IAAIGRVGLG FVLPSLSLGA MRGVDFTLIP QGSSAVNFLR QLGGAIGVSA
TGIFLQWRLA ARGIGAVGGV AVDPEARIVA CDETFVFLGV LCALAVAAAW RMRRREPAAV
VSAGVGP
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