| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1081 |
|---|
| Symbol | |
|---|
| ID | 1219893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1137553 |
|---|
| End bp | 1139964 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637237447 |
|---|
| Product | glucosidase protein |
|---|
| Protein accession | NP_519202 |
|---|
| Protein GI | 17545800 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00242883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGC TGCATCCTCC CCGCTTCGCG CTCCAGGCGC GTGAAGGCAA TCACCTCCGC
CTGGTCAGCG CCACGGGTGC CGCGATCGAA CTCTTCGTGC TGGAGGAGGA CATCGTTCGC
GTGCTGGTGC TGCCCGACGG CGAGCTGCGC GGTCCGGCCA CCTGGTCGAT CGCGCCGGGC
ACCGACGATA CCCCGTTCGA CGGGCGCGAC CGGCGCGATC TGGGCGGCTT CGCGCTGCCG
CCGTTCGAGC TGCAGGTCGA GGCCGACACG CTGCGCCTGG AGACCGGCAA GATCCGCCTG
AGCGTGGCGC TGGCCGGCGG CCACTGCGCC TGGGCGATCC GCCAGGGCGG GCAATGGCGC
GCGGTGCTGT CGGACCGCGC CACCCAGGCG TGCAACTTCG GCTTCTGGGA TGCGCAGGTC
TATCACTACG TGCGGCGCGA GCCCGGCGAG ATGTACTTCG GCCTGGGCGA GCGCGCCGGC
GAGCTGGACC GCGCGCGCCA GCGCTACGAG ATGCGCAACA TCGACGCGAT GGGCTACAGC
GCGCGCACGA CCGATCCGCT GTACAAGCAC ATCCCGTTCT ACCTGACGTG GCAGCCCGAG
GCCGCCGCCG GCTTCGGCCT GTTCTACGAC ACGCTGGCCG ACTGCAGCTT CGACATGGGC
CGCGAGCTGG ACAACTACCA CGGCCCGTAC CGCTACTTCG TCGCGCAGCA CGGCGATCTC
GACTACTACT TCATCGCCTC GCCCGACACG CCGCTCGATG CCGTGCGCCG CTTCACGTGG
CTGACCGGCC GGCCCGCCTG GATGCCCAGA TGGGGCCTCG GCTATTCGGG CTCGACCATG
ACCTACACCG ATGCGCCGAA TGCGCAGGAG CGCATGGGCG AATTCATCGA GCGCTGCCGC
GAGCACGACA TCCTGTGCGA TTCGTTCCAC CTGTCGTCGG GCTACACGTC GATCGGGCCC
AAGCGCTACG TCTTCAACTG GAACCGCGAC AAGTTTCCGG ACGCGCGCGG CTTTGTCGAC
GGCTATCTCG AGCGCGGCAT CCGCCTGTGC GCCAACATCA AGCCGTGCCT GCTGCGCGAT
CACCCCGCAT TTGCCGAGGC CGACAAGGCC GGCCTGCTGG TGCGCGATGC CCATGGCGAG
CCCGCGTGGG TGCAGTTCTG GGACGAGGTG GGCGCCTATC TCGATTTCAC CAACCCCGAC
ACCGTGGCCT GGTGGAAGGC GCACGTGAAG CACGCCTTGC TCGACTACGG CATCGCCGCC
ACCTGGAACG ACAACAATGA ATTCGAGGTG TGGACGCCGG ATGCGTTCGC GCAGGGCTTC
GGCAAACCGT ATCCGGTGCG CGAGGCCAAG GTGCTGCAGA CCCAGCTGAT GATGCGCGCC
TCGCGCGATG CGCAGCGCGA GCATGCGCCG TCGGTGCGGC CCTTCCTGGT GTCGCGCTCG
GGCGGTGTCG GCATGCAGCG CTACGTGCAG ACGTGGTCGG GTGACAACAC CACGTCGTGG
GAGACGCTGC GCTACAACAT CAGGATGGGC CTGGGCCTGG CGCTGTCGGG CGTGTCGAAC
ATCGGCCACG ACATCGGCGG GTTTGCCGGC CCGGCGCCGT CGCCCGAGCT GCTGGTGCGC
TGGGTGGCGT GCGGCGTGTT CATGCCGCGC TTTTCGATCC ACTCGTGGAA CGACGATGCC
ACCGTCAACG AGCCGTGGAT GTATCCGCAG GCCACCGGGC AGATCGCGGC GCTGATCAAG
CTGCGCTATC GGCTGATCCC GTATCTCTAC GAGCTGCTGT GGCAGTCCAC GCAGGCCTAC
GAGCCGGTGC TGCGACCGAC CTTCGCCGAC TTCCCGGCCG ACCGCCGCTG CTATGCGGCA
TGCGACGACA TGATGCTGGG CGCATCGCTG CTGGTCGCGC CGGTGGTGGA GGCGGGGCAG
ACCCGGCGCG AGGTCTACCT GCCGGCGGGC GCGTGCTGGG TGTCGTACTG GAGCGGCGAG
GCCTTCGAGG GTGGGCAGGC TGTCACGCTG CCGGCGCCGT GGGATGCGCC GGTGATGCTG
GTCCGCGAGG GCGGGGTGAT CGCGCTCAAC GTGGCCGAGC AGCATTTCGA TCGGCGCGGC
GACCGGCGCG GCTTCCTGGT GGTGCCGGTC CGGGGCGCGG GCGTGGCCGC CGGCGGCTGC
ATCGAGGACG ACGGCGAAAC CGAAGCCTGG CGCCAGGGCG AGCAGGGCCG CTGGCGCGTG
CAGGCGGTCT CGGACGCGCA CACGGTCACG CTGTCCGTCA CGCAGGAAGG GCGCATGCCG
GCGCGGGCCG ATACGGTCGA ACTCTTCCTG CCGGCCGGCG AGGCGCGGCA GGTGCTGGCG
CCGCAGGCCC GCGTGCTCGA GCAGGCGGTG GCGGGCGGCT GGCGCCGGTT CACGCTGCAG
TTGCCGCGCT GA
|
|---|
| Protein sequence | MSMLHPPRFA LQAREGNHLR LVSATGAAIE LFVLEEDIVR VLVLPDGELR GPATWSIAPG
TDDTPFDGRD RRDLGGFALP PFELQVEADT LRLETGKIRL SVALAGGHCA WAIRQGGQWR
AVLSDRATQA CNFGFWDAQV YHYVRREPGE MYFGLGERAG ELDRARQRYE MRNIDAMGYS
ARTTDPLYKH IPFYLTWQPE AAAGFGLFYD TLADCSFDMG RELDNYHGPY RYFVAQHGDL
DYYFIASPDT PLDAVRRFTW LTGRPAWMPR WGLGYSGSTM TYTDAPNAQE RMGEFIERCR
EHDILCDSFH LSSGYTSIGP KRYVFNWNRD KFPDARGFVD GYLERGIRLC ANIKPCLLRD
HPAFAEADKA GLLVRDAHGE PAWVQFWDEV GAYLDFTNPD TVAWWKAHVK HALLDYGIAA
TWNDNNEFEV WTPDAFAQGF GKPYPVREAK VLQTQLMMRA SRDAQREHAP SVRPFLVSRS
GGVGMQRYVQ TWSGDNTTSW ETLRYNIRMG LGLALSGVSN IGHDIGGFAG PAPSPELLVR
WVACGVFMPR FSIHSWNDDA TVNEPWMYPQ ATGQIAALIK LRYRLIPYLY ELLWQSTQAY
EPVLRPTFAD FPADRRCYAA CDDMMLGASL LVAPVVEAGQ TRREVYLPAG ACWVSYWSGE
AFEGGQAVTL PAPWDAPVML VREGGVIALN VAEQHFDRRG DRRGFLVVPV RGAGVAAGGC
IEDDGETEAW RQGEQGRWRV QAVSDAHTVT LSVTQEGRMP ARADTVELFL PAGEARQVLA
PQARVLEQAV AGGWRRFTLQ LPR
|
|---|
| |