| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0655 |
|---|
| Symbol | cpaC |
|---|
| ID | 1219460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 701858 |
|---|
| End bp | 703762 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637237014 |
|---|
| Product | outer membrane channel protein |
|---|
| Protein accession | NP_518776 |
|---|
| Protein GI | 17545374 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.885837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.521037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGAT TCACTGACCA TTGCGGCAAG CAGCGCCGCG TCGGACCGCA CCTGAGAGCA
ACCGCGCTGG CCGCCGCCGC GCTCAGCGGC CTGTGGCTGG GCACGGCGCA CGCGCAGGCC
GGCGTGGAAA GCGCCATCGT CACCAGCAAC ATGGCCGCGC CTACCAAGCC GCTGCGCATG
GCCGCCAATG GCCCGATCCA GCTCACCATC GGCAGCGCCC GCGCCGATAC CGCACGCGAA
AACACAGTCA AGGGGCCGAA CTGCACCGGG CCGATGCGCG ACCACAGCGA GGTGACGGTG
CCGGTCGGCA AGTCGACCAT GGTGCAGCTG ACCGAGCCCG TGCGCAGCCG CACAGTGGGC
AACCCCAACA TCGTGCAGGC GATGCTGGTG TCGCCGCAGA CGCTCTACCT GCTGGGCCAG
GACGTGGGCA CCACCAACAT GATCGTGCAG GGCCGCAGCG GCTCGTGCAG CGTGATCGAC
GTGTCGGTGG GCGCTGACCC CGGCGGCCTG CAGGCGACCC TGCATGCGCT GATGCCCGAG
GCCAGCCGCG TGCGCGTATC GGCCGCGGCG GACAGCCTCG TGCTGGGCGG CACGGTGAGC
GATTCGGTCC AGGCCCAGAA GATCATAGAC ATCGCCAACG CCTTCGTCAT GCGCGAGACC
CGCGGGCCCG CGCAGAGCGG GCAGACCGGC ACGATGGGCA TGCAGGGCAT GACCGCCATG
TCGACCGGCA ACGCCGCCAC CGCCAGCTCC GGCTCCGGCG AGGCGGTGCG CAACCCCCGC
ATCATCAACA TGATGTCGGT AGAGGCTCCG CAGCAGGTGA TGCTGGAAGT GAAGGTGGCG
GAAGTCTCCA AGACGCTGAT CAACCAGATG GGCGCCGCGC TCAACCTGAA CGGCAGCTTC
GGCAGCTGGA CCTTCGGCGC GCTGGCCAAC TTCCTGTCCG GCGCCCCCGA CATCTTCTCC
GCCGACAAGG CCAACAAGCT GCCCTTCCAG CTCCGGGTCG ATGCGCAGAA GGGCGACGGC
CTGGTCAAGG TGCTGGCCGA GCCCAACCTG ATGGCGATCA GCGGGCAGGA AGCCAGCTTC
CTGGCGGGCG GCAAGGTCTA CATCCCGGTG CCGCAGAGCT TCGGCACGGG CACCACGACC
ATCCTGCTGC AGGAAGAGAC GTTCGGCGTC GGGCTGCGCT TCACGCCGAC GGTGCTGGAA
AACGGCCGCA TCAACCTCAA GGTCGCGCCG GAGGTCTCCG AGCTCTCGCC GACCGGCGTG
GCGGTGACCG CGCCCAACGT GTCGGGCACG TCGATCCTGC CGCTCATCAC GACCCGCCGC
GCCTCGACCA CGCTGCAGGT CCACGACGGC CAGAGCTTCG CCATCGGCGG CCTCATCAAG
AGCAACGTCA CGGGCAGCCT CAAGGCGATC CCGGGCGTGG GCGAACTGCC CGTCATCGGC
GCGCTGGCCC GCAGCACCAG CTTCCAGCAG GACCAGACCG AACTGCTGTT CGTGGTGACG
CCGCACCTGG TCAAGCCGCT GCCGGCGAAC TACCCGATGC CGACCGACAG CTTCGGCCCG
GTCAACCAGG GCGAGGTCTA TCTCAACGGC AACATGGAAG GCCATCCCGC CTCGCGCCCG
GCACCGGCGC CCACACAAGG CAGCTTCGTG CCCGAGCCGG CCACGCCGCC CGCCGCGGCG
CCGGTCGTGA AGACCGTGGT GACCGTCCCG GCTGCGGCCG CGGGACCGGC CTCCGCGGCC
TCCGCCATCG CGGCACCGGC CAAGCCCGCC TCCGATCCCG CGCCGGCCCC GGCCGCGCCC
AAGGCGCCGA GCGCCGGCAT CGCGCCCAAG GACACCGCCA TTGCCGCCGC GCCCGCCCCC
CGCCGCCTGG TCCGCGTGGC GGACGACTCG CACGCCGGCA ACTGA
|
|---|
| Protein sequence | MDRFTDHCGK QRRVGPHLRA TALAAAALSG LWLGTAHAQA GVESAIVTSN MAAPTKPLRM
AANGPIQLTI GSARADTARE NTVKGPNCTG PMRDHSEVTV PVGKSTMVQL TEPVRSRTVG
NPNIVQAMLV SPQTLYLLGQ DVGTTNMIVQ GRSGSCSVID VSVGADPGGL QATLHALMPE
ASRVRVSAAA DSLVLGGTVS DSVQAQKIID IANAFVMRET RGPAQSGQTG TMGMQGMTAM
STGNAATASS GSGEAVRNPR IINMMSVEAP QQVMLEVKVA EVSKTLINQM GAALNLNGSF
GSWTFGALAN FLSGAPDIFS ADKANKLPFQ LRVDAQKGDG LVKVLAEPNL MAISGQEASF
LAGGKVYIPV PQSFGTGTTT ILLQEETFGV GLRFTPTVLE NGRINLKVAP EVSELSPTGV
AVTAPNVSGT SILPLITTRR ASTTLQVHDG QSFAIGGLIK SNVTGSLKAI PGVGELPVIG
ALARSTSFQQ DQTELLFVVT PHLVKPLPAN YPMPTDSFGP VNQGEVYLNG NMEGHPASRP
APAPTQGSFV PEPATPPAAA PVVKTVVTVP AAAAGPASAA SAIAAPAKPA SDPAPAPAAP
KAPSAGIAPK DTAIAAAPAP RRLVRVADDS HAGN
|
|---|
| |