| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0215 |
|---|
| Symbol | |
|---|
| ID | 1219018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 237412 |
|---|
| End bp | 238239 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637236572 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | NP_518336 |
|---|
| Protein GI | 17544934 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATG TTGTCGTAGT GATCGGATCC GGCGCCATCG GCCAGGCGAT CGCGAGGCGT
GTGAGTACGG GCAAGCATGT GCTGCTCGCC GATCTGCGCG AAGAGAACGC AAACGCGGCC
GCCAGGACGC TCAGCGACGC GGGTTTTGAA GTGAGCACCG CCTGTGTCGA TGTTGCGCTG
CGCGAGTCCG TACAGGCGTT GGCCGACACG GCCCAGGCCA TCGGTCCCGT CACCGGCGTG
ATCCATGCCG CAGGGGTGTC GCCGACGCAG GCCTCCCCCG CCACCATCCT GAAGGTCGAC
CTCTATGGCA CCGCGCTGGT GCTGGAAGCG TTCGGCAACG TGATTGCCCG CGGCGGCGCC
GGCATCGTCA TCGCCTCGCA ATCCGGACAC CGCCTGCCCG CGCTGACGCC GGAACAGGAC
AAGGCCCTGG CCCTGACACC GACCGACGCC CTGCTCGCGC TCCCCATGCT CCAGCCCGAC
CAGGTGACGG ACCCGCTGCA CGCCTACCAG CTTTCCAAGC GCGGGAACGC ACTGCGGGTC
ATGGCCGAGG CCGTGCGCTG GGGCAAGCGC GGCGCGCGGG TCAACACCAT CAGCCCCGGC
ATCATCATCA CGCCGCTGGC GAACGACGAA CTCTCCGGCC CGCGCGGCGC GGGATACCGC
CGGATGATCG AACTGTGCGC CGCCGGACGC GCCGGCACCC CCGACGAGAT CGGCAACCTC
GGCGCACTGC TGATGGGGCC GGATGGGACG TTCATTACCG GCAGCGACTT CCTCATTGAT
GGGGGGGTGA CTGCGGCTTA TTGGTATGGG GAGTTGGGGG CGGGGTGA
|
|---|
| Protein sequence | MKDVVVVIGS GAIGQAIARR VSTGKHVLLA DLREENANAA ARTLSDAGFE VSTACVDVAL
RESVQALADT AQAIGPVTGV IHAAGVSPTQ ASPATILKVD LYGTALVLEA FGNVIARGGA
GIVIASQSGH RLPALTPEQD KALALTPTDA LLALPMLQPD QVTDPLHAYQ LSKRGNALRV
MAEAVRWGKR GARVNTISPG IIITPLANDE LSGPRGAGYR RMIELCAAGR AGTPDEIGNL
GALLMGPDGT FITGSDFLID GGVTAAYWYG ELGAG
|
|---|
| |