| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0170 |
|---|
| Symbol | |
|---|
| ID | 1218973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 190677 |
|---|
| End bp | 192380 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637236527 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518291 |
|---|
| Protein GI | 17544889 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.925369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.490181 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC GGTTCGACGG CGGGTATCTG ATTTTCCTCC TCGGCATCAT TACGCTCACC
ACCACGGTGT ACGCGGTCTG GACCCACTTC TCGCCCGTGC CGTACGCTGA TCAGTGGGAC
GGCACAATCG GCTTCTACCT CCGGGCGCTG CAGAATCCGT GGCAGGCATT CTTTGAACTG
CACAACGAAC ATCGCCTGAC ATTTTCGCGG CTCTTTTTTT ACGCTGATAT ACGCTACTTC
GGCGGAAGAA ACGTGCTGCT ACTGGTCGCC AATGTCGTAT TGGCGGGACT TCTCGCGGCT
GTATTTTTTC GTGTAGTCAT CCGGAACGGC GCACCGCAAG ACCGGGAAAC GCGCATCGGC
CTGGCCGGGC TCATTTTGGT CTTTGTATTT TCATGGGTCC AGGGGGCGAA TTTTGCCTGG
GGCTTTCAGA ACCAGTGGTT TGCCGTCAAT CTTTTCTCGC TGCTGGCATT TCATTATTTA
GAACTGGCGG GAGATGCCTA CCGGAGAAGT TCCTCGCCGG AAAGCAACGC TTTGCTCGCG
AAAGCGCTGC TGAGCGGCAG CGTTGCGGCG CTTTCGATGG CGAGCGGCCT GCTCGTGTTC
CCGATTTTGG TCGTTCAGGC GTTGTATCTG CGGTTTAGCA GGCGCACCGT CTGGTTGCTC
GTCACAACGA CCGCCGCCAC GTGGATCGCA TACTTCTTTG ACTGGAAGGG TCTATCGGGC
AATGCCCACC TGCTCACTGC ACTGCGCGAA CACCCGGCCG AAGCGCTGCA ATATGTGCTG
CTATATCTTG GTGCCCCCGC GTATCTTCTG TCTCGCAGCG AGCCAATTGC TTATGCGGGC
GGTGCAACCG TACTCCTCAC ATTTGCATGT CTCGTGCTCA AAGCACTACG ATCGCGTGCG
CCGGCACCCG CGATTTCGCT GCTTGCATTT GCTTTGTTTG CAATCAGCAA TGCAGTGACC
ACTGCAAGCG GCCGACTCTC GATCGGAGTC GAACATGCGT TGCAGTCACG CTATACGACA
GCTTCGCTGG CGGCATGGCT TGCGTTGATC CTCTTTGCGA CACTCAATTT TGATTCGCAA
AAAGGGCGGA AGTCCGTGCT GGTCACGGCC GTGATCGTCT CGCTCTTCGT GGCATCGGGC
CAGCGATTCA CCAGCGTAAA CAGCAATCAC GCTGCCTTCA GCCGCCGTTT CGCCGGCCTT
GCTCTGCGAT CACATGTCTA CGACCTGGAC ATCACTGGCG CCGTCTATCC CTTACCGGAA
CCACTGAGCA TCATCAGCCA GGCCGCTGAG CAAGCGAACG TATCGATTTT TGCGCCAGAC
CAGCCAGATT ATTTCGTTCC GCCTTCGCAT GTCACCGCTA CGTCGATTTG CGACGGACAC
ATCGACAAGA TTGCGGCTAC GACAACGCCC GGTATGTATC GTGCGGAAGG CTGGATTTTC
GATGCAGGCG AAAAACGTGT GCCGCGGGAT GTAGTCGTGA CGGATGCGGA TGGCGCGACG
CTAGGCACGG GAGTCACGGG CAAAGAATAC TATGGCGCAC TCGAAATCAA GGACCCGAAT
GCGCTATACA GAGGTTGGAG TGCCCTTTTT AAAGCACCGA CTTTGATCAC CCCTCTGATC
GTTGCCCCGA CGAGCCAGGG TACCTATTGC AAGCTGCAGG AGACCGGGAC GGCGTACAAC
GTCGACAAGA CCTCCGCACC ATGA
|
|---|
| Protein sequence | MKTRFDGGYL IFLLGIITLT TTVYAVWTHF SPVPYADQWD GTIGFYLRAL QNPWQAFFEL
HNEHRLTFSR LFFYADIRYF GGRNVLLLVA NVVLAGLLAA VFFRVVIRNG APQDRETRIG
LAGLILVFVF SWVQGANFAW GFQNQWFAVN LFSLLAFHYL ELAGDAYRRS SSPESNALLA
KALLSGSVAA LSMASGLLVF PILVVQALYL RFSRRTVWLL VTTTAATWIA YFFDWKGLSG
NAHLLTALRE HPAEALQYVL LYLGAPAYLL SRSEPIAYAG GATVLLTFAC LVLKALRSRA
PAPAISLLAF ALFAISNAVT TASGRLSIGV EHALQSRYTT ASLAAWLALI LFATLNFDSQ
KGRKSVLVTA VIVSLFVASG QRFTSVNSNH AAFSRRFAGL ALRSHVYDLD ITGAVYPLPE
PLSIISQAAE QANVSIFAPD QPDYFVPPSH VTATSICDGH IDKIAATTTP GMYRAEGWIF
DAGEKRVPRD VVVTDADGAT LGTGVTGKEY YGALEIKDPN ALYRGWSALF KAPTLITPLI
VAPTSQGTYC KLQETGTAYN VDKTSAP
|
|---|
| |