| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0395 |
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| Symbol | rpoD |
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| ID | 3718865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | - |
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| Start bp | 2125036 |
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| End bp | 2127042 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640071606 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_353471 |
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| Protein GI | 77463967 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTCA AAGACACTGA CGACGGCAAA CCCGAGGATC AGGACGCCGA AACCTCGCTG
GACATGAGCC AGGCCGCCGT CAAACGGATG ATCGCGGAGG CGCGCGAGCG CGGCTATATC
ACCTACGATC AGCTCAACAC GGTTCTGCCG CAGGACCAGG TCTCGTCCGA GCAGATCGAG
GACGTGATGG CCATGCTCTC GGAGATGGGC ATCAACGTCA TCGAGAACGA GGAGGCGGAG
GAGGGCGAGC CCGCGGGCGA GCTCGTCGAG CAGGGCTCGG GGTCGCGCGA GATCGCCGTG
GCGGGAACGC AGGGCGAGAC GCTCGACCGC ACCGACGATC CGGTGCGCAT GTATCTGCGC
GAGATGGGCT CGGTGGAGCT TCTGAGCCGC GAGGGCGAGA TCGCCATCGC CAAGCGCATC
GAGGCCGGCC GCAACACGAT GATCGCGGGT CTCTGCGAGA GCCCGCTGAC CTTTCAGGCC
ATCACGATCT GGCGCGACGA GCTTCTGTCC GAAGACATCC TGCTGCGCGA CGTGATCGAC
CTCGAGGCGA CCTTCGGCCG CTCGCTCGAC GGCGATGGCG ACGACGAGAT CGACGGGCCG
GAGATCGACG AGGTCGAGGT GGCCGCGGCG CCCGCGCCGG CCCCGCGCCG GTCGACCTCG
TCCGAGCCCG AACTCGATGC CGACGGCAAC CCGATCAGCC GCGCCGAGGA AGAGGACGAG
GACGACGAGG CCTCGGCCAT GTCGCTCGCC GCGATGGAAG CGGCGCTGAA GCCGCGCGTG
CTCGAGACGC TCGAGCTGAT CGCGCGCGAC TACGGCAAGC TGGCCGAGAT GCAGAACCGG
CGCATGTCGG CCACGCTGAA CGATCATATC CGCTTCACGA CCGAGGACGA GGCCGCCTAT
CAGAAGCTGC GCTCCGAGAT CGTGCTTCTG GTGAACGAGC TTCATCTGCA CAACAACCGG
ATCGAGGCGC TGATCGACCA GCTCTACGGC ATCAACCGCA AGATCATGTC GATCAACTCG
GCCATGGTGA AGCTGGCCGA TGCGGCCCGC ATCAACCGGC GCGAGTTCAT CGACGAATAT
CAGGGCTACG AGCTCGACCC GATGTGGGCC GAGCGGATGG CCGCGAAGTC GGGCCGCGGC
TGGCAGACCC TGATGGAGAA GAGCCGCGAC CGGGTCGAGG ATCTGCGGGG CGAGATGGCG
CAGGTCGGCC AGTATGTCGG CGTGGATATC TCCGAGTTCC GCCGCATCGT GAACCAGGTC
CAGAAGGGTG AGAAGGAAGC CCGTCAGGCC AAGAAGGAGA TGGTCGAGGC GAACCTGCGT
CTCGTGATCT CGATCGCCAA GAAATACACC AACCGCGGGC TGCAGTTCCT CGATCTGATC
CAGGAGGGCA ACATCGGCCT GATGAAGGCG GTGGACAAGT TCGAATACCG GCGCGGCTAC
AAGTTCTCGA CCTATGCGAC CTGGTGGATC CGACAGGCCA TCACGCGCTC CATCGCCGAC
CAGGCCCGCA CGATCCGCAT CCCGGTCCAC ATGATCGAGA CGATCAACAA GCTGGTGCGG
ACGGGGCGGC AGATGCTGCA CGAGATCGGC CGCGAGCCCA CGCCCGAGGA GCTGGCCGAA
AAGCTGCAGA TGCCGCTCGA GAAGGTCCGC AAGGTGATGA AGATCGCCAA GGAGCCGATC
TCGCTCGAGA CGCCCATCGG GGACGAGGAA GACAGCCAGC TCGGCGATTT CATCGAGGAC
AAGAACGCGA TCCTGCCGCT CGATTCCGCC ATTCAGGAGA ACCTGAAGGA GACGACCACC
CGGGTCCTGG CCAGCCTCAC CCCGCGCGAG GAGCGGGTTC TGCGGATGCG GTTCGGCATC
GGCATGAACA CCGACCATAC GCTCGAAGAG GTGGGCCAGC AGTTCTCGGT GACGCGCGAG
CGCATCCGCC AGATCGAAGC CAAGGCGCTG CGCAAGCTCA AGCATCCCAG CCGCAGCCGC
AAGCTGCGGA GTTTCCTCGA TCAGTAA
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| Protein sequence | MAVKDTDDGK PEDQDAETSL DMSQAAVKRM IAEARERGYI TYDQLNTVLP QDQVSSEQIE
DVMAMLSEMG INVIENEEAE EGEPAGELVE QGSGSREIAV AGTQGETLDR TDDPVRMYLR
EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFQA ITIWRDELLS EDILLRDVID
LEATFGRSLD GDGDDEIDGP EIDEVEVAAA PAPAPRRSTS SEPELDADGN PISRAEEEDE
DDEASAMSLA AMEAALKPRV LETLELIARD YGKLAEMQNR RMSATLNDHI RFTTEDEAAY
QKLRSEIVLL VNELHLHNNR IEALIDQLYG INRKIMSINS AMVKLADAAR INRREFIDEY
QGYELDPMWA ERMAAKSGRG WQTLMEKSRD RVEDLRGEMA QVGQYVGVDI SEFRRIVNQV
QKGEKEARQA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY
KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLVR TGRQMLHEIG REPTPEELAE
KLQMPLEKVR KVMKIAKEPI SLETPIGDEE DSQLGDFIED KNAILPLDSA IQENLKETTT
RVLASLTPRE ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR
KLRSFLDQ
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