| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0300 |
|---|
| Symbol | |
|---|
| ID | 3719155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 2029315 |
|---|
| End bp | 2031243 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640071510 |
|---|
| Product | ABC branched chain amino acid transporter, inner membrane subunit |
|---|
| Protein accession | YP_353375 |
|---|
| Protein GI | 77463871 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.247535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTTG TCCTGATCCT CCTCGCAGTG CTCGCCTCTG CGCTTCCCGT CCTCGCGCAG
GGCACGCCCG CCGCGCAGAT CCTTTCCGAG AACCGCGCCC TGATCGAACG GTCCTCGCGC
CAGACCATCG GCCCGGTGAT CGAGGCGCTG GCGGCGTCGG GCGATGCTTC CGCCGCAGCA
ATCCTCGACG CCTGGGCCGA CCGGCGGCTG GGCTTTCGCG AAAGCGACGG CACCTTCTTC
CTGATCGAGC CGGCCGACGG CGGATGGGCG CTCCGCGACC TGGCCGGCGC CCCCGCGGGC
ACCGCGGGCC GGGGCGAGAT TGCGCAGCTG CGTCCGAACA GCGGCGTCCG TGGTCTCATC
GCCACCGCGC TCGTGCGCTT CCAGTTGGCC GATCCCGATC CCGCGCGCCG CTCGGCGGCG
CTTGCCTCCA TCGCCCGCGA TCCCGCGCCC GAGCATCTGG AGCCGCTGCG GGCCGCTCTG
GCCCAGGCGC CCGATCCGGC CATGGCCCGG CTCGAGCGGC TCCTGACGCT GCGCTTCGGG
GCCAGCGCCG CCGAGCGCGT CGCCGCGATC GAAAGCTTCG GCGCCGATCT CGGCCTCGAT
CTCCGCGCCG CGCTGAACCC GCTGGTCGCC ACGCGCCGCA CCGCGGTCGA GAGCGCGCCC
GAGGGGCTCA ACATCGCCCG CGAGCTCGTG CCCGGGCGCG ACCTGCCGCG GGAAGAGGCC
TACGATCTTC TGGTGGCCGA GGGCCTGGCC CCCGCCCGCC TCAGCCGCAC GGCGCTGCGC
GAGACGCTCG TGGCGCAGAT CCGGGACGGG CAGGTGGCGG GCATCCCCGT GGCGGCGCTC
GACAGCCCCG AGGCCCGCGA CCGCGCCTAT ACTGCGCTCG AGGCCCGGGG CCTCGTGCCC
CCCGGCGCCA CCGAGGACGA GGTGACGGCC ACCCTCGACC GCTTCCGCTT CCTCGACCTC
TATGCCGAGC CCGACCCGGC CGTCACCGAG GCCGCAAGCG CCGCTCTGGC GCGCATCGGG
CGCACCGTGG GCCTGATGCA GGCGGCCGAC CTCGCCCTCG ACGCGGCCTC GCTGGCCTCG
ATTTATTTCC TTGCGGCCAT CGGCCTTGCC ATCACCTTCG GCGTGATGCG GGTCATCAAC
ATGGCCCATG GCGAATTCAT CATGATGGGG GCCTACACGG GCTATGTGGT CCAGCAATGG
ATCTCCGACT ACACGATCTC GATCCTCGTG GCGCTGCCTC TGGCCTTCGC CGTCACCTTC
GCGGCCGGCG TCGCGATGGA GCGGCTGGTG ATCCGCCATC TCTACCGCCG CCCGCTCGAG
ACGCTGCTGG CCACGTTCGG CATCTCCATC GCGCTGCAGC AGCTCGCCAA GAACATCTTC
GGCACCCAGG CCCGGCCGCT GACCGCGCCC GCCTGGCTCG ACGGCGCGCT GAGCTTCAAC
GACGTGGTCT CGATCAGCTA CATCCGCATC GCGATCTTCG TCCTCGCAAT GATCTTCCTC
GGCGTCTTCC TCTTCATCAT GACGCGCACC CGCCTCGGGC TCGAGGTGCG GGCGGTAACG
CAGAACCCCT CGATGGCGGC CTCGATGGGG ATCAACCCCG ATCGGATCAA CATGCTGACC
TTCGGGCTCG GCTCGGGTAT CGCGGGCATC GCGGGCGTGG CCATCGGCCT CTTCGCCAAG
GTCACCTCCG AGCTCGGACA GGATTACATC GTCCAGAGCT TCATGACGGT GGTCGTGGGC
GGCGTCGGCA ACATCTGGGG CACGCTCGCG GGGGCCGCGA TGATCGGCGG GGTGCAGAAG
GGCATCGAGT GGCTCAATCC CTCGAACACG CTCGCGGCCC AGACCTACAT GATCCTCTTC
ATCATCATCT TCATCCAGTT CCGGCCGCGG GGCATCGTCG CCCTGAAAGG CCGTGCCGCG
GGAGACTGA
|
|---|
| Protein sequence | MRFVLILLAV LASALPVLAQ GTPAAQILSE NRALIERSSR QTIGPVIEAL AASGDASAAA
ILDAWADRRL GFRESDGTFF LIEPADGGWA LRDLAGAPAG TAGRGEIAQL RPNSGVRGLI
ATALVRFQLA DPDPARRSAA LASIARDPAP EHLEPLRAAL AQAPDPAMAR LERLLTLRFG
ASAAERVAAI ESFGADLGLD LRAALNPLVA TRRTAVESAP EGLNIARELV PGRDLPREEA
YDLLVAEGLA PARLSRTALR ETLVAQIRDG QVAGIPVAAL DSPEARDRAY TALEARGLVP
PGATEDEVTA TLDRFRFLDL YAEPDPAVTE AASAALARIG RTVGLMQAAD LALDAASLAS
IYFLAAIGLA ITFGVMRVIN MAHGEFIMMG AYTGYVVQQW ISDYTISILV ALPLAFAVTF
AAGVAMERLV IRHLYRRPLE TLLATFGISI ALQQLAKNIF GTQARPLTAP AWLDGALSFN
DVVSISYIRI AIFVLAMIFL GVFLFIMTRT RLGLEVRAVT QNPSMAASMG INPDRINMLT
FGLGSGIAGI AGVAIGLFAK VTSELGQDYI VQSFMTVVVG GVGNIWGTLA GAAMIGGVQK
GIEWLNPSNT LAAQTYMILF IIIFIQFRPR GIVALKGRAA GD
|
|---|
| |