| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05403 |
|---|
| Symbol | RSp0930 |
|---|
| ID | 1223237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1172106 |
|---|
| End bp | 1178732 |
|---|
| Gene Length | 6627 bp |
|---|
| Protein Length | 2208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637240790 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_522491 |
|---|
| Protein GI | 17549151 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.166405 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTGCG CCGGTCCGCG AGAGGATGGC GCCGATCCGC TCGAGCGTGT GTCGCACAGT
CGGCAGGCCT CGCGCATCCC GCTCAAGCGC AAGCGCGAAG CCGGTGATGA CACTGACGTG
CGCCCGACAT CCTTGCCGCG CCGGGGCGAA ATCGCCGCCT TTCACACGGC CGCATGCGAT
GCGGATGCAC CGACCACGCC GCCGACCACG CCACGCGCCG AATCCAGGCG CGAACCGACC
GCGGAGCAGC TCACCGACTA TGGCCGATGG CTGGGGCACA CCGAGTTCGG CAGGCTCGCC
GCCCTGCGTG AGCAGCAGTG CGCGCGCCTG TGGAAGCTGG TGGCGAGCGC CAGGCGGGGG
AAGGTCGATC CGGATTTCTG CCTTCATGTG GCGAGGGACA ACACCTTGGC GCAGCGCAAC
GGCTACGGCC TTGCCCTGAT GTTCCTGGAT GGCTCCGTGC CGCCCGAAGA AAACGCCCGA
CGCCTGGACG GCTACCTTTT TGCCTTGGGC GCCGCATCCG CCCCCACGCA CGCCGAGCCG
CATCGGCAGG TACGGGGGCT GGAACAGTGC GTGGAGATGG CCGCGTGCTA TCTGTTCAAG
ACCCGCTGGT TCATGGATGC CCCGCTGGAG AAACTGGCGG AACTGGGCAA TCTGCTGAGC
AAATATCCGA GGCAGCCCGC ATCCATGGCG GCCATCGCTT GGATTGCCGG CCAGGCGCTG
AAGCCCGGGC CGTTGCCTCG ACTCGGCGCC AAGGAATTGA CGCTGCTGGC CAATGCCTTC
TCCAAGAACG GCGATAGCGG GCGATGTGAA CAGGCAACGG CGCGCATCGG GCGCCACCTG
CTGCACGACG GGGGTGAGCA GACCTTCGAG GCGCGGCAAA TCGGGCTGCT GCTCAACGCC
TTCAGCAAAT GGCCTGGCGA CACCGATTGC CGGGCGGCGG CCGAATACCT TGCCGCGCGG
CTGGAGCGAT CGCCAGGATT GCGACAGGCC ATGGACGCGC AGGCGGTTGC GACCGCGATC
AACGGGCTGA GCAAGTGGCC GGAGACCGCC GTGTGCCGCA ACGTTGCCGA GCATCTCGCT
GCCCGGCTGG TGCATGAAGC GGCGCTGTTG GAGCGCATGA CGGCGACGGC GGTTGCCGCT
TCGCTCAACG GGCTGAGCAA ATGGCCGAAA GCGGAGATCT GCGGGGCGGC CGTCGAATGC
GTGGCCGAGC AACTCGTGAA AGCGCCCGGG CTGCGGCAGG CAATGAGCGC ACAAGAGATC
GCCAATGCCT TCAATGCGCT GAGCAAGTGG CCGGACAGCG CGGCTTGCCG CGCCGCCGCC
GAATGCCTGG CGGTTCGGCT CGCGGACGAC CCCCGGCTTC AGGCGAGCAT GAATGCGCAA
GAGGTGGCCA GCACGCTCAA CGCCCTGTGC AAGTGGCCGA GGACGACGGC TTGCCGAGAG
GCGGCCCTGG GCCTGGCTGC TCGCATCCGC AGCGAGGCGG ATCTTCGCGA CGCCCTCGAC
GCGCAACAGC TCGCCAACAC GCTCAATGCA TTGGGCAAGT GGCCCGATGC AGACGTTTGC
CGTGCCGCTG CCGAGCGCCT GGCGATCCGC CTCGGTCGCG ACGCGGCGTT GCGAGACGGT
TTGAACGGGC AGCATATCGG CAATGTGTTC AATGCGCTGG GCAAATGGCC GGAGTCGGCG
GCCTGCCTGG CGGCGGCAGC GTGCTTGACA GCCAGGTTGA CGGACGAGGT GGCGCTTCTG
CTGTCCATGG ATGCGCAGGG CGTCGCGGCT GCGCTCAACG GCTTGAGCAA GTGGCCGGAG
TCCGCGGCCT GCCGGACGGC CGCCGAACGG CTGATCGCGC GGCTCTCGTC CGATGCCGAT
TTGCGGCAGG GCATGGATGC ACAGGCCGTC GCCAATGTGC TCAATGCGCT GAGCAAGTGG
TCTAGGGAAG ATCACTGCCG GGCGCTTGCC GAGCAGCTGG CGATGCGGCT GGTCGATGAT
GCGGAGCTTC GGCAAGCCAT GAATGCGCAG GAAGTCGCCA ATGCGATCAA CGGGCTGAGC
CGGTGGCTGG AGCAGCCGCA TTGCCGCCGA TCCCTGCTGC TGCTGACGGC CAGGATGGGC
GAAGCCGACC TGCCTTGGCG CAATGCGGAA ATGTCGGCAC TGGCACAGGC CGCCAACGCC
TTTGCGCGCC TGTTCCTCAG CGCACCGGAC GACGCCGAAC TCCAGGCGCC GGCGCGCATC
AAGCTCCAGG CGCTGGCAGC CCACCTCGAT CTGTACCGCG AACGCTTCGA AACGTGCAGC
GCCCGCGAAA TCGCGATCGT CTTGAAGGCC ATGGCTTCGG TGCAATTGCA GCATGACATG
CGTCCTCTGG CCAGGCCCGC CCTGGAGCGG CTGGCCGCGT TGTGCCCCAC GACCGGACTG
CGCAATGAAA ACCTTGAAAC CATGGGCACC CTGTGCCTGG GGCTGTTGCC CCTGGCACGC
AGCCGGGTGC TGATTGCTTA CCGCCGGCGC GCGCTCTGCG TGCTCGGCAC GCTTCAGCCG
ATCGTGGCGC GCAAGATCGA GCGCTTTGTC CAGCCACGGC TGGGCACCGC GGAAAAGGCG
CTTGCCGCGG ACACGGCGAT GCGCGAAGAG TCGCACGCCA CGCGGCGTGC GGCGCTGACC
TTCTACCAGG TGCTCAAAAC GTATTCCGTG GTGAGCGATA TGTGGAAGAC GCGCTATATC
GAAGGTTCGC GCCGGTCGGT GCGCGACCAG CGGGATCGGC TCGCCGCCTG GGTGAAGCAG
ACGCTGGAGC GCTCGCGTGA GGCGATCGAA GCCGATCTGG GGGAAGACAG CTGGAACATC
ATCGCCCGGA TCGAGGCCGA CGCGGACGTG CTGAACGCAT TGGATCTGCG CATACAGCAC
CAGACCGCGC TGATCACGCA AAACCATCCG CCAAGCCGTT TCGATCTGGG CGCCGCGCAT
CGGCGCATGC GCACGTTGAA GCCCGGCGCC CCTGTGCCGC CGGCCCGTGG CGCAGGCGAC
ACCCACTATG TCGTGGTGGA TATGGCGGGC AAGGAGCTGA AGCACAACCG TGACGAACCG
AGCAAGCCGT ACTCGCTCTA TGCGCGGTTG ACCGGTCTGC CCCTGGTGGA GGTCAAGCTG
CCCGGTGAGC TGTCGGCGTT CATGCTCGCG CGTACGTTCC GGTACCAGGG CGAGCCGTGG
CGGTTCGATC TGTTCGGCGG CAGCCGGCTG AGCCGGGGAG GGGGGCTGCG GCCGCACGAT
ATCCTGTCCA ATCACGCGGC CCCGGCTGCA ATGCTTCCGG CGGTGCGTTA CGCCGACACG
GCCCCCGGCA GCAGCCTGAT GCAGCTGGCC GCCAAGCTGG CGCCGTTGCG CGAAGACTGG
GCGCGCATGC AGCGCGCCTT GCTGGAAATG GTGCCGAGCG ACCATGTGGT CGAGGGCACG
TTGCGACTGG GCTTCTTCGA CGATGTGGAC GGCCCGGAGC ACCCGTTCAA GCTGCAGAGC
CCCGATGGCC AGCGCATTCA GCTGTGCCCG AATGATGGCT GCGGGTTCCT CAAGTTCGAG
GTGGCCATGT GCATTCCGGT GTTTCGTGAC CACGTCATGG CCTGGAATGC CATGCGCGCC
GGTCGCGCCA CGCCGGCCCA GCAGAAACTG CTGGAGACCA GCAACGACCG CAAGCGCATC
GCGCCGCAGG CGCTGCAGCA CTTTCCGCGC GACGAGGCCG CGCTGGAGGA AGCCCGGCGG
GCCATCGAGC GCAAGCTGGC GCAACTGGCG CCGAAGCCGG CGAGCGGCCA GGCGCCCTCG
CGCGTCGACC CGCTGACGCT GTATCACCTC ACTGTCAGCG GCGGCTATGA GGGCGAGCAG
ATTCGCGCGG TCCCCTCGGC TGACGACAAC GTGCATCTGC CGGCCCAGCG TAGCGGGGCC
TTCGATTTGC ATGGCGGCGC GCTGCTGATC GGCAAGGCGC CATACGACAA GGAGAACTTG
CTGCCGTTTC CCGACGAGCA AGTCGGCACG GTGGAGCGGG GCGACGCGAC AGCCAGCTTT
CTGTCCAGGT GCTTTGCCAT CCAGTACAGC TTCACGGGCT TCAATGACGA CGCGGGCGAG
GGCGCTGAAA TGCTGCACAG CAAAGGCATG CTCATCGTGC CGCCGCCGCA GTACTGGTCG
CCTGATCATG CGGGCATGGA CATGGCCTGC TCCCGGGAGG ACTTGAAGAC CTTGTCACGC
TGGATCACCG GCCGCAACCG CGCCACGTTG CCGCCCGAGA TGCGCAGTAC CGGCAGCCTG
CGCGTCAAGG AGGTGGTGGT CCCCGGGCGG CTGGGTGCCC TGCCGATCAC CGAGCTGCGC
AAGCGGGACA TGGACACCGA CGGCGACGAT GCCTTCGTGT ATGCGGGCTA TCCCAAGTTG
GCCGCGCACA TTTCCCGCGT GATGGACGAC CGCAAAAAGC GCCGCGGCCA GCAGCGCTCC
TTCAAGCCGC GGAAAACCGC GGCACCGGCG CAGGATCCCA AGGACGGGCA ATACCAACCC
GGCCGGGCGG CCGAGATTCT GGCCGAGCAG CGCGGACGCC GTCTCCGGGG CACCGCCAGT
GTCTTCGCCA AGCGTTTTCT GGCGCAGTCC GACGACATGC GCGAAGCGAT GGCGCGCGAC
ATGATGTTCG GTGTCTATGA CGGCATCGAG CGCCCGCTGC GAAACGGCTT GCTCGAGCAG
TTCGAGGCGG AGCAGGCGGA TCCGCAAGCA CTGGACGCGC TGCGCAACCA TGCGTTCGAA
GATATCGCCA ACACCCATTT GCCCGAAGCC GAGGAGGCCG CCCAACTGCT GCATGATGAG
GTCTTCCGGC TCCAATCCGT CCCCGCGGCC AAGGCTGCCG GGATGCCTGC CGGGCTGGCT
GACCGGTTCC CATTGCTGGC ACAGGCGTAC GAGCAGGCCG GCGACACCCG CGCGCGCGTC
CAGGCCATCC TGGAAAACTA TCCGGTATGC CGGTTGTCGT GCGAGCAGTT TCCGGAAGGC
CAGCCGGGCT TGGTGCGAGG CTCGCCGGAG CTCACCCTGC GCAACCTGTG CACCATCGCC
ATCAAGGTCG GGACGGACGC GCTGAAATCC GACACGGGGA CCGAACTGTT CTCCAAGGTG
ATCGAGACCT GCCTGCGCAG CGAACGCACG TTCCGCGAGC GCATCGGCAG CGTGCCTTAC
GGCAAGGAAA CGGCCTATGC CATGCATGAC GGCCGCTTCG ATCCCGAGCA GGCGAAAGCG
GAGTTGCGGC ATAACCCGAC CATGGCTGCC GGCGTCATGA TTCACTCGGT GGAGGCCTTG
CAGCAATGGG GCCTGCTGGC TCCGGCGCCG ACGCCACAGG CACGCTTTGC GAACACGCCG
GCACTGGATG TCAGCCAGGC GATCCGGTTG CTTGCCGATC GCGCCAGCCG CATGGATGCG
GCGATCACGC CGACGCTGCG CAACATCGCG CAGGCGGCCG GCGCGCAACT GGCCGGTCTG
CGCCATCGGC TGAAGTCTTC GGGCTCGCTG AAGGAAAAGC TCAAGCAAAT GGTGGCGCAC
AAGCACATGA CGCTGGAAGA CGCCGTACCG CAGGTCAACG ACGCGCTGCG CTACAGCGTC
GTGCTGCCGT CCCAGGATTT CGCAGCCGGA TGCCGCCGCA TCCAGGCTGC GCTGGACGAG
CAAGGGCACG CGCGGGTGAA GCTGGTCAAC CACTTCGTCA AGCGATATGA GCCGTTCAGC
GCGATCAACG TGACGTTGCG CGATCCCGAG GGGCATCTGT GGGAGATCCA GTTCCACACG
CCGCAAACCT TCGACCTCAA GGAGCACTAC CACGACCTGT ACAAGCGATC GCACCATCTG
CGGCTGCAAG GCGTCCCGGC CGCACGGCTT CAAGAACTGA CCCGCCCGGC CCGCGACGCC
TTCCGCGCCG TTCCGATGCC CCCAGGGTGC GAAGACATCA TCGACTGGGA AGCCGAACAG
ACCAGCGTGG CCTTGCCTGC GGTACGCGCC CAGCTTGTGC CGGAGCCCGT GTACGCCGAG
CTCGTCAATC GCCTGCACCA GGCCGCCAAG GCGATGGAGC CGGAGATCAC ACCCGTATTG
CGCGCGCTCC TGCAGCACGT GCAGGGGCAT CTGCATGGCG ACGGCCCCGA GCTGCATCGG
CACGTGTTCA AGAAGCCGGC CTCGACGCAC CGCAAGATCG AGCTGCTGCG GCATCAGCAC
GCTTTGCCGC CCGAACAGGC GGCGGCGCGG GTGCGCGACG CGCTGCGCTA CGAGGTCGTG
CTGCAGCACG AAGGCTTCGT CGCATCGGTA CAGTGGGTCT CGCGGCAACT ACAGTCCGAA
GGGCTGGAGG TCATGCGCAT CAACAACACC TTCGCCACGG CCGATACCAC CTACGCCGGA
CTGAACATGA ACCTGCGCAG CGGGGCACAT CACTTCGAAA TCCAGTTCCA TACACCCGAC
AGTCTTCGCA TCAAGCAGAA GACACACAGG CTGTATGAAA AGCTCAGGCG CATTGCGCGC
CCTGAAGCGA TGCCGCCGCA CAACGGGCAG AACCCACCCG CATCCGAGCG CGAAAGCCTC
GAGCATGGCC TCCGCTCCGC AGCCGCGACG GTGCGCCGCC CGGAGGGAAT CGAGGCCATT
GGGTCGATCG ATCGCTATGA GGGGTAA
|
|---|
| Protein sequence | MACAGPREDG ADPLERVSHS RQASRIPLKR KREAGDDTDV RPTSLPRRGE IAAFHTAACD
ADAPTTPPTT PRAESRREPT AEQLTDYGRW LGHTEFGRLA ALREQQCARL WKLVASARRG
KVDPDFCLHV ARDNTLAQRN GYGLALMFLD GSVPPEENAR RLDGYLFALG AASAPTHAEP
HRQVRGLEQC VEMAACYLFK TRWFMDAPLE KLAELGNLLS KYPRQPASMA AIAWIAGQAL
KPGPLPRLGA KELTLLANAF SKNGDSGRCE QATARIGRHL LHDGGEQTFE ARQIGLLLNA
FSKWPGDTDC RAAAEYLAAR LERSPGLRQA MDAQAVATAI NGLSKWPETA VCRNVAEHLA
ARLVHEAALL ERMTATAVAA SLNGLSKWPK AEICGAAVEC VAEQLVKAPG LRQAMSAQEI
ANAFNALSKW PDSAACRAAA ECLAVRLADD PRLQASMNAQ EVASTLNALC KWPRTTACRE
AALGLAARIR SEADLRDALD AQQLANTLNA LGKWPDADVC RAAAERLAIR LGRDAALRDG
LNGQHIGNVF NALGKWPESA ACLAAAACLT ARLTDEVALL LSMDAQGVAA ALNGLSKWPE
SAACRTAAER LIARLSSDAD LRQGMDAQAV ANVLNALSKW SREDHCRALA EQLAMRLVDD
AELRQAMNAQ EVANAINGLS RWLEQPHCRR SLLLLTARMG EADLPWRNAE MSALAQAANA
FARLFLSAPD DAELQAPARI KLQALAAHLD LYRERFETCS AREIAIVLKA MASVQLQHDM
RPLARPALER LAALCPTTGL RNENLETMGT LCLGLLPLAR SRVLIAYRRR ALCVLGTLQP
IVARKIERFV QPRLGTAEKA LAADTAMREE SHATRRAALT FYQVLKTYSV VSDMWKTRYI
EGSRRSVRDQ RDRLAAWVKQ TLERSREAIE ADLGEDSWNI IARIEADADV LNALDLRIQH
QTALITQNHP PSRFDLGAAH RRMRTLKPGA PVPPARGAGD THYVVVDMAG KELKHNRDEP
SKPYSLYARL TGLPLVEVKL PGELSAFMLA RTFRYQGEPW RFDLFGGSRL SRGGGLRPHD
ILSNHAAPAA MLPAVRYADT APGSSLMQLA AKLAPLREDW ARMQRALLEM VPSDHVVEGT
LRLGFFDDVD GPEHPFKLQS PDGQRIQLCP NDGCGFLKFE VAMCIPVFRD HVMAWNAMRA
GRATPAQQKL LETSNDRKRI APQALQHFPR DEAALEEARR AIERKLAQLA PKPASGQAPS
RVDPLTLYHL TVSGGYEGEQ IRAVPSADDN VHLPAQRSGA FDLHGGALLI GKAPYDKENL
LPFPDEQVGT VERGDATASF LSRCFAIQYS FTGFNDDAGE GAEMLHSKGM LIVPPPQYWS
PDHAGMDMAC SREDLKTLSR WITGRNRATL PPEMRSTGSL RVKEVVVPGR LGALPITELR
KRDMDTDGDD AFVYAGYPKL AAHISRVMDD RKKRRGQQRS FKPRKTAAPA QDPKDGQYQP
GRAAEILAEQ RGRRLRGTAS VFAKRFLAQS DDMREAMARD MMFGVYDGIE RPLRNGLLEQ
FEAEQADPQA LDALRNHAFE DIANTHLPEA EEAAQLLHDE VFRLQSVPAA KAAGMPAGLA
DRFPLLAQAY EQAGDTRARV QAILENYPVC RLSCEQFPEG QPGLVRGSPE LTLRNLCTIA
IKVGTDALKS DTGTELFSKV IETCLRSERT FRERIGSVPY GKETAYAMHD GRFDPEQAKA
ELRHNPTMAA GVMIHSVEAL QQWGLLAPAP TPQARFANTP ALDVSQAIRL LADRASRMDA
AITPTLRNIA QAAGAQLAGL RHRLKSSGSL KEKLKQMVAH KHMTLEDAVP QVNDALRYSV
VLPSQDFAAG CRRIQAALDE QGHARVKLVN HFVKRYEPFS AINVTLRDPE GHLWEIQFHT
PQTFDLKEHY HDLYKRSHHL RLQGVPAARL QELTRPARDA FRAVPMPPGC EDIIDWEAEQ
TSVALPAVRA QLVPEPVYAE LVNRLHQAAK AMEPEITPVL RALLQHVQGH LHGDGPELHR
HVFKKPASTH RKIELLRHQH ALPPEQAAAR VRDALRYEVV LQHEGFVASV QWVSRQLQSE
GLEVMRINNT FATADTTYAG LNMNLRSGAH HFEIQFHTPD SLRIKQKTHR LYEKLRRIAR
PEAMPPHNGQ NPPASERESL EHGLRSAAAT VRRPEGIEAI GSIDRYEG
|
|---|
| |