Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS04687 |
Symbol | RSp0175 |
ID | 1222578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 216083 |
End bp | 218971 |
Gene Length | 2889 bp |
Protein Length | 962 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637240034 |
Product | putative VGR-related protein |
Protein accession | NP_521736 |
Protein GI | 17548396 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACTTCA AGACGCTGCT GCAGCACCTC TTCGCCCCCG CGCACCGCCT GTACGCGCTG GAAGGCGAAG GCCCGATCGC GGAACTGGCG GTGGAGGCAT GGCTCGGCCG CGAGGCCTTG TCCGAGCTGT TCGAATGGCG GGTGGTGGCC GCCAGCGCCA ATGCGCGCTT CGCCCTCGAA TCGTTCATCG GCCAGCGCGT GACGCTGGTC ACCACGCTGG CCGACGGCAC GCAGGCCCGG CGCACCGGCC TGATCCGGCA GGCCGAGCAG CTTGGCGCCG ATGGCAGCCT CGCGCGCTAT CGCCTGACCG TGGTGCCGTG GTTCTGGCTC GCCACCCAAC AGCGGCACAG CCAGGTGTTC CAGAACCGGC CGCTGGCGGA CATCCTCGAA CAGGTGCTGT CGCCGTATGC GCCCTATGCC GCATGGCGCT TCGCCGCCGG CGCGGAAGAC CGCATGGCGG CGTTCGGCAC GCGTAGCCAC ATCGCTCAGT TTCGCGAGAC CGACTACCGC TTCGTCACGC GCCTGCTGGC CGAGGCGGGT CTGGGCTTCA CCACCGTCGA GGACGAGCAG GCCCCCAGCG GCCACGCGCT GCTGATCTTT GCCGACAGCC CCCGGCTGGC CGAGGACACG GCATCCGCTG CCGAGGGCGG CATCCGCTAC CACCGCGCGC ACAGCCAGGA AGAACGCGAC GCCATCCAGG CGTTGATCTG CCATAGCCGC ACAGCGGTCG GCGGAGTGGC GGTGGCGGCC TGGGATGCGC AGGCCAAGCG GGCCTTCCGC GCGCACGTTC CCTCTCGGTT TTGCGGTATC GCGGGCAGCC CGGATGCCTA TCTGTCGATC AGCCCGTCGC TGGCGCCGGA TACGGCCAAC GCGCAGCGCA TCGCCGAGCA GGTGATGGAG AGCGTCGAAG CGCGCGCTCG CCTGTTCATC GGACGCGGCT CGGTGCGCAC GCTGCGCAGC GGCACGCGAC TGAAGATCGT GGACTGCCCG CACCTGCCGA AGGACGTGGA CGGCCCGTAT CCGTTGCTGA TCGACCTGGT GGAGCACTGC GGCATCAACA ACCTGACCGC CGATACGCAG GCAACATTGG CCCGGAAGCT GGGCGGGCTC GACGCCGCAC TGACCTTCGA CACGCCGCCC AGCCCCCCCG AATCCGGCCC CGGCCCGTTC GGCTTCATGG CGCCACACGA GGTCATCGAA CGCTTCACGC CGACGGCGGA CCTGCTCACC GCTGCGCGCG CCCACGGCTA CGCCGGCCAA TTCCGCGCGG GTGACGCACG CCGGCCGTGG CGACCGGTCG TGTCACACCC CGACACCGGC CGCCTGTACG CCGAGCCCAC CGCCAGGGGC GTGCAGAGCG CCATCGTGGT CGGCCCGAAC GGCGAGACCG AGGCCAGTGG CGATGCGGAG CACCACACCA CTCCACGGGG CCAGGTCCGC GTCCGCTTCC CGTGGCAGCA GGGCGAACGT CCGGATGACC GCAGCACCGG CTGGCTGCTG GTCGCGCAGC GGCAGGCCGG GGCCGGCATG GGCTGGCAGT GGCTGCCGCG CATCGGCCAG GAGGTGCTGG TCAAGTTCCA GGAAGACGAC ATCGACCAGC CGGTGGTGAT CGGCGCGCTC TACAACGGCC AGGGCGAAGC GGGCATTGCG CCGACCCCTG GCGGGCAGGT CGCCAAGGGC GTCAGGCAGG AAGCCGACCC GGAGACCCTC TACCGTTTGG GCAGCGACAG CGCCGCCAGC GCGCAGGGCA ATCTCGCCGC CGGCCACAGC CCCGCATGGC ACGGCCTGGG CACCGAGGCC GAAGGCCACC GCAACGCCGC CGCCCTCAGC GGCTTCAAGA GCGCCGAGCA CGGCGGGCGC GGCGCCAACC TGCTCGTCTT CGACGACAGC GACGGGCAGT TGCGCACGCA GTTGGCCACC ACGCAGGCCT ACAGCCAACT GAACCTGGGC CACCTGATCC ACCAGCAGGA CAACCGGCGC GGCAGCTTCC GGGGCCAGGG CTTCGAGTTG CGCACCGATG GCTATGGCGC GGTGCGCGGC CAGGCCGGTG TGCTGCTGAC CACTTACCGC GATGCCACGA GCGGCAAGGC TGTGCCGACC GGCGACAACG CCGCCGGCAT CGCGCTGATC CGGCAGGCCA AACAGCTCAC CGCATCGTTG AGCCAGGGCG CCACCACGCA TCAGACCGCC GCGCTGTCCA CCGCCAAGGA CGACAGTGCG CCGCTCGCCA AGCAAGAGAA GGCCGCCTCC GGCATGGTGG ACGGCAAAGC GCTCGACGCC GCCCAGCAGG ATGCGGCCGC AGGCAACACC GCCACGCAAG GCAAGGTGCC GCATCAAAGC GAAGCGACGG TGCAGCTGGC CGGCCGCGCG GGGCTGGTGG CGATCGCCGG GCAGGACCTG CAATTCGCCA ACGGCGAGAG CGTTGTGCTG GCCAGCGGCC AGGACACCAA CGTCGCGGTG GGCAAGCAGG CGCGCATCCA TGCTGGGCAG GGCATCGGCG TGGCGGCGGG GCTGTCGAAG GCGGGGGACG ACAACATCGG GCTGCAGCTG ACGGCGGGGC AGGACAACCT CGACGTGCAG GCCCAGCATG ACGCGCTCGG GCTGCTGTCC AAGGACGACC TGAAGCTGGT GTCGGCGAAT CTGCATGTGG ACTTCGCGGC GGCCAAGCGG ATCCGGCTGG CGACGGCAGC GGGGGCGTCG ATCACGCTGG AGGGCGGAAA CATCATCGTC GAGACGCCGG GGCGGATTAC GTACAAGGCG GCGCAGCGCA GCTTTGCGGG GCCGGTGACT CAGTCGTATC CGTTGCCGGT GTTTCCGCAG GGCGTGTGCG TGGAATGCGT GCTGCGTGCC ATGGGCAAGC AGCATGCGTT TGCCAACAAG AACGGCTGA
|
Protein sequence | MDFKTLLQHL FAPAHRLYAL EGEGPIAELA VEAWLGREAL SELFEWRVVA ASANARFALE SFIGQRVTLV TTLADGTQAR RTGLIRQAEQ LGADGSLARY RLTVVPWFWL ATQQRHSQVF QNRPLADILE QVLSPYAPYA AWRFAAGAED RMAAFGTRSH IAQFRETDYR FVTRLLAEAG LGFTTVEDEQ APSGHALLIF ADSPRLAEDT ASAAEGGIRY HRAHSQEERD AIQALICHSR TAVGGVAVAA WDAQAKRAFR AHVPSRFCGI AGSPDAYLSI SPSLAPDTAN AQRIAEQVME SVEARARLFI GRGSVRTLRS GTRLKIVDCP HLPKDVDGPY PLLIDLVEHC GINNLTADTQ ATLARKLGGL DAALTFDTPP SPPESGPGPF GFMAPHEVIE RFTPTADLLT AARAHGYAGQ FRAGDARRPW RPVVSHPDTG RLYAEPTARG VQSAIVVGPN GETEASGDAE HHTTPRGQVR VRFPWQQGER PDDRSTGWLL VAQRQAGAGM GWQWLPRIGQ EVLVKFQEDD IDQPVVIGAL YNGQGEAGIA PTPGGQVAKG VRQEADPETL YRLGSDSAAS AQGNLAAGHS PAWHGLGTEA EGHRNAAALS GFKSAEHGGR GANLLVFDDS DGQLRTQLAT TQAYSQLNLG HLIHQQDNRR GSFRGQGFEL RTDGYGAVRG QAGVLLTTYR DATSGKAVPT GDNAAGIALI RQAKQLTASL SQGATTHQTA ALSTAKDDSA PLAKQEKAAS GMVDGKALDA AQQDAAAGNT ATQGKVPHQS EATVQLAGRA GLVAIAGQDL QFANGESVVL ASGQDTNVAV GKQARIHAGQ GIGVAAGLSK AGDDNIGLQL TAGQDNLDVQ AQHDALGLLS KDDLKLVSAN LHVDFAAAKR IRLATAAGAS ITLEGGNIIV ETPGRITYKA AQRSFAGPVT QSYPLPVFPQ GVCVECVLRA MGKQHAFANK NG
|
| |