| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02606 |
|---|
| Symbol | RSp1100 |
|---|
| ID | 1223412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1394497 |
|---|
| End bp | 1395933 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637240965 |
|---|
| Product | putative lipoprotein transmembrane |
|---|
| Protein accession | NP_522661 |
|---|
| Protein GI | 17549321 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.368368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.191333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATGACG CGCTTGTCCA GTTGATCGGG CAGTTCGCGA GCGCGGTGTC GCCCGCGCTG
CTGCCGTTCG TCACGGCGTG CGGCACGGGT TGCCTGTTGC TGCGCTTGCT CGATGACCTG
CACCGGCAAC CGGCCGGTCC CGCGCGCCTG CCGCTGCTGC TGACGGCGCT GGCTGCCGCC
ATCGGCCTGT GGACGGTTTC GCTGCTGCCC CTGCTGGCGC ATTGGCCATC GCACGAAGCG
GCGTCCGGCA CGCACGGCAT GGTGCTTACG CTGGCGGCGT TCGGCTGGAG CCTGGCGGTC
ACCGCGCTGT GGTGCATGCT GGGTGCGCGG CCGGGCGTCG GACTGGTCCG CACGCTGCTG
ATGGGCCTGC TGCTGGGCGC CTGCGGTCCG ATGATGCAGC TGATCCAGGC CGGCGCGCAG
ACCGTGGAGA CGGTCGCGCT GTCGGATGCG GGCGTGCTCG CCGTCGTGGT GGTCCTGTCG
GCCACGGCCT GTGCGGCCGT GCTGCAGTTT GCGCTGCTGC CCGCGGAAAC GGGGCGGCGT
CCGGCCATGA GCGTGTTCGT CTGCCTGCTG CTGGGCTTCG GGCTGACGCT GGGCGCGGTG
CTTGCCGGGC CGATTCTCGG CGCGCAGCAA GCATCGGCCG CCACCGGGGC GCCGGAAGGG
GCACGCCTGG CCCTGGTGGC CGGTCCGGTC GTCGCCGTGC TCGCGGTGCT CCTGCTCGGC
TTTCGCGACC GCGCAGCCGG CGATCGGTCG GCGGCGGTCG TCGCGCGAGA GATTCGTCGC
CGCAAGGAAA CCACGCAGGC GCTGAACGAC CTGGAGCAGA GCTATCGCCA GCGCGAAGCC
GAGCTCAGCG CGCGGCACCA GCTGCTGCTG GACGGCGCCC ACGTCGGACT GTGGGAGTTC
GACCTCATCA CGCGCGGCGC GCATTTCTCC GAGCGGTTTG CCGCCATGCT CGGCTATACG
CTCAAGGAAA TCGGTCCGAG CACCAGCGAA TACCTGCGGC TGGTCCATCC GGACGACCTG
CCGCTGGTGC TCAACCGCAT CCAGGTCCAT GTCGATGGCG ATGCGCCGTC CTACGCGGCC
GAATTCCGCA TGCGCCACAA GGACGGCGGC TACCGTCGCA TCCAGGCGAG CGGCGTCGCG
TTGCGCGATG CCGGCGGCCG GGCCACGCGC ATGGCGGGCT CGCATACCGA CATCACGCAG
CAGGCCACTG CCGTGGCCGC GGCGCAGCCG CCGTCCGCCT ACGCCCCCGC CCAGGCCGCG
CCGGACGTGC CGCTCCGGCG CCAGGGCCTG TGGGAGTCGT GGTCGCCGCT CGACAACACG
CCTGCCGCGG CAAGCGCCGA GCCCGCCATG CCTGCCCAGG CATCGAGCCC CGCCCCCGGC
CCGGTACCCG CCACCGACGG CGTGTTCCCG ACCATCGATC CTTCCGCATT GCACTGA
|
|---|
| Protein sequence | MDDALVQLIG QFASAVSPAL LPFVTACGTG CLLLRLLDDL HRQPAGPARL PLLLTALAAA
IGLWTVSLLP LLAHWPSHEA ASGTHGMVLT LAAFGWSLAV TALWCMLGAR PGVGLVRTLL
MGLLLGACGP MMQLIQAGAQ TVETVALSDA GVLAVVVVLS ATACAAVLQF ALLPAETGRR
PAMSVFVCLL LGFGLTLGAV LAGPILGAQQ ASAATGAPEG ARLALVAGPV VAVLAVLLLG
FRDRAAGDRS AAVVAREIRR RKETTQALND LEQSYRQREA ELSARHQLLL DGAHVGLWEF
DLITRGAHFS ERFAAMLGYT LKEIGPSTSE YLRLVHPDDL PLVLNRIQVH VDGDAPSYAA
EFRMRHKDGG YRRIQASGVA LRDAGGRATR MAGSHTDITQ QATAVAAAQP PSAYAPAQAA
PDVPLRRQGL WESWSPLDNT PAAASAEPAM PAQASSPAPG PVPATDGVFP TIDPSALH
|
|---|
| |