| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01940 |
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| Symbol | RSp0768 |
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| ID | 1223075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 968930 |
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| End bp | 971950 |
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| Gene Length | 3021 bp |
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| Protein Length | 1006 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240628 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_522329 |
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| Protein GI | 17548989 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTAA CGACCCTTCT CCAGAACCTC TTCGCTCCCG CGCACCGCCT GTACGCGCTG
GAAGGCGAAG GCCCGATCGC GGAGCTGGCG GTGGAGGCGT GGCTCGGTCG CGAGGCGTTG
TCCGAGCTGT TCGAATGGCG GGTGGTAGCG GCCAGCGCCA ATGCGCGCTT CGCCCTCGAA
TCGTTCATCG GCCAGCGCGT GACGCTGGTC ACCACGCTGG CCGACGGCAC GCAGGCCCGG
CGCACCGGCC TGATCCGGCA GGCCGAGCAG CTTGGCGCCG ATGGCAGCCT CGCGCGCTAT
CGCCTGACCG TGGTGCCGTG GTTCTGGCTC GCCACCCAAC AGCGGCACAG CCAGGTGTTC
CAGAACCGGC CGCTGGCGGA CATCCTCGAA CAGGTGCTGT CGCCGTATGC GCCCTATGCC
GCATGGCGCT TCGCCGCCGG CGCGGAAGAC CGCATGGCGG CGTTCGGCAC GCGTAGCCAC
ATCGCTCAGT TTCGCGAGAC CGACTACCGC TTCGTCACGC GCCTGCTGGC CGAGGCGGGT
CTGGGCTTCA CCACCGTCGA GGACGAGCAG GCCCCCAGCG GCCACGCGCT GCTGATCTTT
GCCGACAGCC CCCGGCTGGC CGAGGACACG GCATCCGCTG CCGAGGGCGG CATCCGCTAC
CACCGCGCGC ACAGCCAGGA AGAACGCGAC GCCATCCAGG CGTTGATCTG CCATAGCCGC
ACAGCGGTCG GCGGAGTGGC GGTGGCGGCC TGGGATGCGC AGGCCAAGCG GGCCTTCCGC
GCGCACGTTC CCTCCCGGTT TTGCGGTATC GCGGGCAGCC CGGATGCCTA TCTGTCGATC
AGCCCGTCGC TGGCGCCGGA TACGGCCAAC GCGCAGCGCA TCGCCGAGCA GGTGATGGAG
AGCGTCGAAG CGCGCGCTCG CCTGTTCATC GGACGCGGCT CGGTGCGCAC GCTGCGCAGC
GGCACGCGAC TGAAGATCGT GGACTGCCCG CACCTGCCGA AGGACGTGGA CGGCCCGTAT
CCGTTGCTGA TCGACCTGGT GGAGCACTGC GGCATCAACA ACCTGACCGC CGATACGCAG
GCAACATTGG CCCGGAAGCT GGGCGGGCTC GACGCCGCAC TGACCTTCGA CACGCCGCCC
AGCCCCCCCG AATCCGGCCC CGGCCCGTTC GGCTTCATGG CGCCACACGA GGTCATCGAA
CGCTTCACGC CGACGGCGGA CCTGCTCACC GCTGCGCGCG CCCACGGCTA CGCCGGCCAA
TTCCGCGCGG GTGACGCACG CCGGCCGTGG CGACCGGTCG TGTCGCATCC CGACACCGGC
CGCCTGTACG CCGAGCCCAC CGCCAAGGGC GTACACACGG CCATCGTGGT CGGCCCGAAC
GGCGAGACCG AGGCCAGTGG CGATGCGGAG CACCACACCA CTCCACGGGG CCAGGTCCGC
GTCCGCTTCC CGTGGCAGCA GGGCGAACGT CCGGATGACC GCAGCACCGG CTGGCTGCTG
GTCGCGCAGC GGCAGGCTGG GGCCGGCATG GGCTGGCAGT GGCTGCCGCG CATCGGCCAG
GAAGTGTTGG TCAAGTTCCA GGAAGACGAT ATCGACCAGC CGGTGGTGAT CGGCGCGCTC
TACAACGGCC AGGGCGAAGC GGGCATCGCG CCGACCCCGG GCGGGCAGGT CGCCAAGGGC
GTCAGGCAGG AGGCCGACCC GGAGACCCTC TACCGTTTGG GCAGCGACAG CGCCGCCAGC
GCGCAGGGCA ACCTCGCCGC CGGCCACAGC CCCGCATGGC ACGGCCTGGG CACCGAGGCC
GAAGGCCACC GCAACGCCGC CGCCCTCAGC GGCTTCAAGA GCGCCGAGCA TGGCGGGCGC
GGCGCCAACC TGCTCGTCTT CGACGACAGC GACGGGCAGT TGCGCACGCA GCTCGCCACC
ACGCAGGCTT ACAGCCAACT CAACCTGGGC CACCTGATCC ACCAGCAGGA CAACCGGCGC
GGCAGCTTCC GGGGCCAGGG CTTCGAGTTG CGCACCGATG GCTATGGCGC GGTGCGCGGC
CACGCCGGTG TGCTGCTGAC CACCTACCGC GATGCCACGA GCGGCAAGGC TGTGCCGACC
GGCGACAACG CCGCCGGCAT CGCGCTGATC CGGCAGGCCA AGCAACTGAC GTCATCGTTG
AGCCAGGGCG CCACTACGCA CCAGACCGCA GCGCTGTCCA CCGCGAAGGA CGACAGCGCA
CCGCTGGCCC AGCAGGAAAA GGCCGCCTCG GGCATGGTCG ACGGCAAAGC GCTCGATGCG
GCCCGGCAGG ACGCGGCCGC AGGCAACACC ACCACGCAAG GCAAGGTGCC GCACCAGAGC
GATGCGACTG TGCAGCTGGC CGGCCGCGCG GGCCTGGTGG CGATCGCCGG GCAGGATCTG
CAATTCGCCA GCGGCGAGAG CATCGCACTG GCCAGCGGCC AGGACACCAA CGTCGCGGTG
GGCAAGCAGG CGCGCCTCCA CGCGGGGCAG GGCATCGGCG TGGCAGCGGG GCTGTCGAAG
GCGGGGGACG ACAACATCGG CCTGCAGCTG ACGGCGGGGC AGGACAACCT CGACGTGCAG
GCGCAGCATG ACGCGCTCGG GCTGCTGTCC AAGGACGACC TGAAGCTGGT GTCGGCGAAT
CTGCATGTGG ACTTCGCGGC GGCCAAGCGG ATCCGGCTGG CGACGGCGGC GGGGGCGTCG
ATCACGCTGG AGGGCGGAAA CATCATCGTC GAGACGCCGG GGCGGATTAC GTACAAGGCG
GCGCAGCGCA GCTTTGCGGG GCCCACGCAC GCGTCGCGCG AGCTGAACAC GTGGTCGCAC
AGTGCGTTTG ACGATCGATA TGTTTTGCGC GACCAAGTCA CGCACGAGCC GCTGCGGAAT
ACGCAGGTCG AATTGCGGCG CGGTGACGGT GCTGTACTCA AGCTGGTCAC CGATGGAGAG
GGCCGCCTCC CTGTGCAGAA GGGTATTTCC ATGGAGCGTG TGCAACTGCG CGTGCTGGGA
ACGCTCTCCG GCAAAACCTA A
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| Protein sequence | MDVTTLLQNL FAPAHRLYAL EGEGPIAELA VEAWLGREAL SELFEWRVVA ASANARFALE
SFIGQRVTLV TTLADGTQAR RTGLIRQAEQ LGADGSLARY RLTVVPWFWL ATQQRHSQVF
QNRPLADILE QVLSPYAPYA AWRFAAGAED RMAAFGTRSH IAQFRETDYR FVTRLLAEAG
LGFTTVEDEQ APSGHALLIF ADSPRLAEDT ASAAEGGIRY HRAHSQEERD AIQALICHSR
TAVGGVAVAA WDAQAKRAFR AHVPSRFCGI AGSPDAYLSI SPSLAPDTAN AQRIAEQVME
SVEARARLFI GRGSVRTLRS GTRLKIVDCP HLPKDVDGPY PLLIDLVEHC GINNLTADTQ
ATLARKLGGL DAALTFDTPP SPPESGPGPF GFMAPHEVIE RFTPTADLLT AARAHGYAGQ
FRAGDARRPW RPVVSHPDTG RLYAEPTAKG VHTAIVVGPN GETEASGDAE HHTTPRGQVR
VRFPWQQGER PDDRSTGWLL VAQRQAGAGM GWQWLPRIGQ EVLVKFQEDD IDQPVVIGAL
YNGQGEAGIA PTPGGQVAKG VRQEADPETL YRLGSDSAAS AQGNLAAGHS PAWHGLGTEA
EGHRNAAALS GFKSAEHGGR GANLLVFDDS DGQLRTQLAT TQAYSQLNLG HLIHQQDNRR
GSFRGQGFEL RTDGYGAVRG HAGVLLTTYR DATSGKAVPT GDNAAGIALI RQAKQLTSSL
SQGATTHQTA ALSTAKDDSA PLAQQEKAAS GMVDGKALDA ARQDAAAGNT TTQGKVPHQS
DATVQLAGRA GLVAIAGQDL QFASGESIAL ASGQDTNVAV GKQARLHAGQ GIGVAAGLSK
AGDDNIGLQL TAGQDNLDVQ AQHDALGLLS KDDLKLVSAN LHVDFAAAKR IRLATAAGAS
ITLEGGNIIV ETPGRITYKA AQRSFAGPTH ASRELNTWSH SAFDDRYVLR DQVTHEPLRN
TQVELRRGDG AVLKLVTDGE GRLPVQKGIS MERVQLRVLG TLSGKT
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