| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00900 |
|---|
| Symbol | RSp0441 |
|---|
| ID | 1222748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 552820 |
|---|
| End bp | 554316 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240301 |
|---|
| Product | inner membrane multidrug resistance transmembrane protein |
|---|
| Protein accession | NP_522002 |
|---|
| Protein GI | 17548662 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.976104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCTGG CGGCCATCCT GTCCGGCCTG AACAACCGCG TCCCCGGCCT GGCGCTGGCC
GATGTGCAGG GTGCCCTGGG CTTTGCGCAG GATGACGCCT CCTGGCTCAA CACCGCCTAT
GCCGCGGGCG AGCTGGCCGC CATGCCCTTT GCCACGTGGT TCGCCGTCAC CTTCTCGATG
CGGCGTTTCC ACCTGGCGAT GCTGGCCGGC GCCCTGGTCC TGTCCGCGAT CCTGCCGTTC
GTGCAGAGCC TGTCGCTGCT GCTGGCATTG CGTGCGCTCC AGGGGCTGCT CTCCGGCGCG
CTGATTCCCA TGCTGATGAT GTCCGCGCTG CGCTTCCTGC CGCCGCCGAT CCGGCTGCAC
GGATTGGCGC TGTACGCGAT GACCGCCACA TTCGCGCCGA ACGTCGCGCT CTGGCTGGCC
GCCCTGTGCG TGGATCGGCT GGAAGACTGG CGCTGGGTCT ACTGGCAGGC GATCCCCCTC
GGCCTGGTCG CGATGGGGCT GGTCGCCTGG GGCGTTCCGA AGATGCCGCC CGCGCTGTCG
CGGCTGAAGC AAGGCAACTG GCTCGGCATG GCGCTGGGCG TGCCCGGGCT GGCCCTGGTG
GTGGCTGGGC TGGACCAGGG GGTGCGCCTG GACTGGTTCC ACTCCCCCCT CATCGTCGCC
GCGCTGGGCG TCGGCATCGT GCTCACGGCG CTGTTCCTGG CCAGCGAGTG GCGCCATCCG
GCGCCCTTCA TGCAGCTGCA GATGCTCGGG CGCCGCAACC TCGGCGTCGG CTTCAGCGTG
TTCGTCTGCC TGCTGATGAC GATGGCCACG GCCGTGACCC TGCCCGCCAG CCTGCTCGGC
CGTCTGCAGG GGTTCCGCAT GGAGCAGATG GCTTCGATCG GGCTGATCGT CGGGCTGCCG
CAGCTGGTGC TGGGCCCCGC CGTCGCGCTG CTGCTGTACC AGCGATGGGT CGACGCGCGC
CATGTCTTCG CCGCGGGGCT CGCCTGCATT GCCGCGGCCT GCTGGCTCGG CGCCGGCATC
ACGAGCGAAT GGATGGTGCC GCAGTTCATG TGGGCCGAGA TCCTGCAGGC CATCGGGCAA
CCCATGGCGG TGATCGCGCT GCTATTCCTG GCCACCAGCG TGGTCCAGCC GATGGAAGGC
CCTTCTGTGG CGGGCATCGT CAACACGTTC CGCGCATTCA GTTCGGTGCT CGGCGGCGCG
CTGATCGGCC AGCTCACGAC CGTGCGCAGC CATTTCCATG CCGACATGCT GCTCGATCAC
GCAGGGCACC TGCTGCCCCG GCTGCCACCG TCCGATCCCG GCGCGCTCAC GCTCGCCGCG
ATGGTCGCAC AGCAGGCCGG CGTGCTGGCG GCGGCCGATG TCTACCGGGT GTTCGGATGG
CTGGCGCTGC TGCTCATCCC GATCGTCCTG AAGCTGCAGT ACATCCCCGC GCCGGCGCAG
ACGCGCACGC CCCAGGCCAC GCCGCCGGCA GGCACGCAGA CCGGTACGGC GCATTGA
|
|---|
| Protein sequence | MLLAAILSGL NNRVPGLALA DVQGALGFAQ DDASWLNTAY AAGELAAMPF ATWFAVTFSM
RRFHLAMLAG ALVLSAILPF VQSLSLLLAL RALQGLLSGA LIPMLMMSAL RFLPPPIRLH
GLALYAMTAT FAPNVALWLA ALCVDRLEDW RWVYWQAIPL GLVAMGLVAW GVPKMPPALS
RLKQGNWLGM ALGVPGLALV VAGLDQGVRL DWFHSPLIVA ALGVGIVLTA LFLASEWRHP
APFMQLQMLG RRNLGVGFSV FVCLLMTMAT AVTLPASLLG RLQGFRMEQM ASIGLIVGLP
QLVLGPAVAL LLYQRWVDAR HVFAAGLACI AAACWLGAGI TSEWMVPQFM WAEILQAIGQ
PMAVIALLFL ATSVVQPMEG PSVAGIVNTF RAFSSVLGGA LIGQLTTVRS HFHADMLLDH
AGHLLPRLPP SDPGALTLAA MVAQQAGVLA AADVYRVFGW LALLLIPIVL KLQYIPAPAQ
TRTPQATPPA GTQTGTAH
|
|---|
| |