| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00710 |
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| Symbol | RSp0334 |
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| ID | 1222466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 438682 |
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| End bp | 441366 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240194 |
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| Product | hypothetical protein |
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| Protein accession | NP_521895 |
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| Protein GI | 17548555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000656351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACG ATCTTTCTTA CCCGCTGTCT GCACAAAGCC TTCCAGTCCC GTTCTACGTG
GTGCTGGAAG GGCGCATCGT GTATGCCAAT GCAGCGGGTG TCTGCATGGT GCGGGCGCTG
TCGGTCGATC AACTGCTGGG CGAGCCCTTC TCGCGCTTCT TTCTCGATGC CCCCGAGTCG
CTGCAACTCG ATGCTGCCCA CGTGCAGGGA GCGCCCGCAG CCCCCGTGGC CGCCCCGTCC
CACGTCGCGC GAACGGCCCT CGCCATGCCC GACGCGCAGT CGGGAACACC TTCCACTGTC
CGCCTGACCA TCACGCCGAC CCGCTTCGAC GGCATGCCCG CCCAGCAGGT CGTCGTGCAC
GGACTGCCGC TGCCGCTCGA TGCGCAACTG CCGGGCAAGC CCGGCGAGCG GGTCCTGAGC
CCGGAAGCCA TCGGTGCGGC GCTGCCGCAT GAACACCTGG ACCACCTGCT GTCCACGCTG
CCCTCCATGG CGTCGCTGGG TGAGCGCCTG TACGCCGCGC TGCGCGCGCT GGAAGGGGCG
CTGCCGCTGA TGCTGTGCAT CGTGGCGCGC GTCGTGTCGA ACCGCGTGAG GCTGTACGGC
ACGCGGGCCG CGCGCGCCCA GCTGGCCGGC AGCCACGACC CCGCCGCACG ACTGACCACC
GCGGCGCAGA GCGAGCTCGA TGCCGAACTC GCCCGCGCTG CGCCGGCGCT GAACGACCTG
CCGCCGGTCG AATTGACGCG GCTTGCCAAC GCGCCCGCCG CCCTGCGCGA CCTCCTGGCC
CGCGTGCCGG GGATCGCCCT GCCGGCATGG GTCTGCCGCA TTCCTGCCCA GCATGGCGGG
GCGCATCCGG ACGAGGATCT GCTCTGCCTG TTCTACGCAT CGCCGTCGGA GGAGCACGGA
CCGCCGGACG ATGCCGCCCA GCACCACACC TGCAACGGCT ATGTCAGCGC CCTGGCCAAG
CTGCTGCGGC TCGAAGGCGA ATACCGGCAG GCGCGGGATC TGCGCGACCA GTACCGGCTG
GTGGTCAACC ACCTCAGCGA AGGCGTGCTG ACGCTCTCGA CCGACGGCCG CGTGCTGTCG
TACAACCGCA GCGCTGCCGA AATCCTGCGC CTGTCGGGCG CCTCGTGGAA AAGCCGCACG
CGCCTGATGC TGAGCGACAT GATGCTGGCC GAGGACGGCA GCATCCTGCC GCGCGCGGCC
TGGCCGTCGA CGCTGGCGGC CCGCACCGGG CGCGCCGTCA ACAACGTCGT GGTGGGCATG
CCGGCCGGCA ACGGACAGAT CGTCTGGCTG CGCGAGTCGG TGCTGCCGAT GTTCTCGCAG
GACAGCGCGT CTCCGCACGC GGTGCTCGTC ATCTTCACCG ACATCACCGC CGAGCGGTCC
ACCTATGAGC AGTTGCGGCT GCTGGAGACC AAGGATTCGC TCACCGGCCT GCCCAATCGC
GCCGCCTTCA TCGAGCGGCT CGACGCGCGC CTGGCGCTAC CGTCCACCGG GCAGGCGGCG
CTGCTGTATA TCGGGCTGGA CCACTTCAAG ACCGTCAACG AGGCCATGGG CCATCACATC
GGCAACCAGG TGCTCAACGT GGCGGCGCAG CGCATCCGCG CCGACGTCGG CCAGCGCGCG
TTGCTGGCGC GGCTGGGCGG CGACCAGTTC TGCGTGGCGA TCGACGTGCC GGACAGGGCC
GAAACGCTCG CGCAGCAGGT GCTCGACGCG CTCGCCAAGC CGTTCTCGGG CGGCGAGCGC
GAAGTGCACC TGTCGGCCAG CATCGGCGTG GCGATGTTCC CCGAGGATGG CAGCGATGCC
GCCACGCTCG TCAGCCGGGC CGAAGCCGCC ATGTACCGCG CCAAGGAGAA CGGCCGCAAC
CGCATGGCCC GCTATTCCCG CGCGCTCGAG ACGCAGCTCC TGCGCCGCTT CACGCTCAAC
GAACGGATGC GGCGCGCGCT GGCGCGCGGG CAGGTGCGCC TGGTCTATCA GCCCAAGTAC
GCGCTCGGCA CGCGCGAACT GGTGGCCGTC GAAGCGCTGA TGCGATGGTC GGACCCGGAG
CTCGGCGCGG TGTCGCCGAC CGAGTTCATC GCGGTGGCGG AGGAGTCCGG CTATATCGTG
GAACTGGGCC GCTGGGCCTT GCAGCAGGCC TGCGCGCAAG GCCAGGCATG GGAGCGCGAT
CTGGGCTTCA CCGGCAGGGT CGCCGTCAAT GTCTCGGCGC GCCAGTGCGA CGCGGGCGTG
ATCGAGCGCG ATGTCGAGGA CGCACTCCGG ATCTCGGGCC TGCGGCCCTC GCGGCTCGAG
CTGGAACTGA CCGAGAGCGT GCTGCTGGCG GACCGCCTAT CCACCCAGCG CCTGCTGACC
AGCCTGTCCA CGCGGGGCGT GCGCATCTCG CTCGACGACT TCGGCATCGG CTTTTCGTCG
CTGTCGTACC TGCGCAGCCT GCCGATCCAC AATATCAAGA TCGACCGCTC GTTCATCAGC
GGCGTGCCGG CCGTGGCGGA CTGCGTGGCG CTGACCAAGA CCATCATCGC CATGGCGCAG
GCGCTCAACA TGACCGTCAC GGCGGAGGGC GTGGAAACCC CCGAGCAGAC CGCCTTCCTG
GAGGCTCACG CCTGCGACGA AGTCCAGGGC TTCCTGTTCG GGCGGCCGCT CGAAGTGCCT
GCGATGGAGG GCCTGCTGCG CTCGCAGGGT GCCGTTTCGA TCTGA
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| Protein sequence | MQDDLSYPLS AQSLPVPFYV VLEGRIVYAN AAGVCMVRAL SVDQLLGEPF SRFFLDAPES
LQLDAAHVQG APAAPVAAPS HVARTALAMP DAQSGTPSTV RLTITPTRFD GMPAQQVVVH
GLPLPLDAQL PGKPGERVLS PEAIGAALPH EHLDHLLSTL PSMASLGERL YAALRALEGA
LPLMLCIVAR VVSNRVRLYG TRAARAQLAG SHDPAARLTT AAQSELDAEL ARAAPALNDL
PPVELTRLAN APAALRDLLA RVPGIALPAW VCRIPAQHGG AHPDEDLLCL FYASPSEEHG
PPDDAAQHHT CNGYVSALAK LLRLEGEYRQ ARDLRDQYRL VVNHLSEGVL TLSTDGRVLS
YNRSAAEILR LSGASWKSRT RLMLSDMMLA EDGSILPRAA WPSTLAARTG RAVNNVVVGM
PAGNGQIVWL RESVLPMFSQ DSASPHAVLV IFTDITAERS TYEQLRLLET KDSLTGLPNR
AAFIERLDAR LALPSTGQAA LLYIGLDHFK TVNEAMGHHI GNQVLNVAAQ RIRADVGQRA
LLARLGGDQF CVAIDVPDRA ETLAQQVLDA LAKPFSGGER EVHLSASIGV AMFPEDGSDA
ATLVSRAEAA MYRAKENGRN RMARYSRALE TQLLRRFTLN ERMRRALARG QVRLVYQPKY
ALGTRELVAV EALMRWSDPE LGAVSPTEFI AVAEESGYIV ELGRWALQQA CAQGQAWERD
LGFTGRVAVN VSARQCDAGV IERDVEDALR ISGLRPSRLE LELTESVLLA DRLSTQRLLT
SLSTRGVRIS LDDFGIGFSS LSYLRSLPIH NIKIDRSFIS GVPAVADCVA LTKTIIAMAQ
ALNMTVTAEG VETPEQTAFL EAHACDEVQG FLFGRPLEVP AMEGLLRSQG AVSI
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