| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4377 |
|---|
| Symbol | |
|---|
| ID | 4024902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 4842988 |
|---|
| End bp | 4843599 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637964587 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_571495 |
|---|
| Protein GI | 91978836 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACG TCATTGCCCT TAACGACGCG GGCCGCCAGG GCATCCTCGC CGCACGGGCC
ACAACAGATG AAATGCTGTT GGCCAGCATT GCCGCCGGAG ACCGGACCGC GATGCACACG
CTGTATTCGC GGCACAACGT TCGGGTCTAT CGCTTCATCC TGCGGATGCT GCGGGACGCC
GCGACGGCGG AAGATCTGGT CAGTCAGGTG TTCCTCGACG TCTGGCGCAC GGCGCGGCAG
TTCGAGGGCC GCGCCCAGGT CTCGACATGG CTGCTGTCGA TCGCGCGCTT CAAGGCGCTG
ACCGCGTTGC GCCAGCGCCA GCACGAGAAC ATCGACCAGG ACGACGTGCT CGAAATTCCC
GACGGCGCGG ATTCGCCCGA AGCCGCGCTC GAGCGCAGCC GGACCAGCGA CATCCTGCGC
GCCTGCATCG CCAAGCTGTC ACCGGCCCAT CGCGAGATCA TCAACCTGGT CTACTACCAT
GAGAAGTCGG TGGAGGAAGT CGGCCGCATC GTCGGGATTC CGCAGAGCAC GGTGAAGACC
CGGATGTTCT ACGCGCGCAA GCAGCTCGCG GCGCTGCTGA AGAGCCACGG CGTCGAAACC
ATGGCCGCCT GA
|
|---|
| Protein sequence | MQNVIALNDA GRQGILAARA TTDEMLLASI AAGDRTAMHT LYSRHNVRVY RFILRMLRDA
ATAEDLVSQV FLDVWRTARQ FEGRAQVSTW LLSIARFKAL TALRQRQHEN IDQDDVLEIP
DGADSPEAAL ERSRTSDILR ACIAKLSPAH REIINLVYYH EKSVEEVGRI VGIPQSTVKT
RMFYARKQLA ALLKSHGVET MAA
|
|---|
| |