| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4287 |
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| Symbol | |
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| ID | 4024810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4748831 |
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| End bp | 4749592 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637964495 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_571405 |
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| Protein GI | 91978746 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00908488 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATTTGG GTTTGAAGGG CGCCAAGGTT CTCGTCACCG GCAGCACCAA GGGCATCGGC
CGGGCGGTCG CCGAAACCTT CGCGGCCGAA GGCGCCGATG TCGGAATCTG CGCGCGCAAC
CAGGCCGATG TCGACAGCAC GGTCGCATCG CTCAGGTCGA AAGGCGTCTC CGCCTTCGGC
GGAGCGGTCG ATGTATCGAA CGGTCCGGCG CTGAAGGCCT GGGTCGCGGA CATGGCGAGC
AAACTCGGCG GCGTCGACGT CGTCGTCGCC AACGTCAGTG CGCTCGCGAT CGGCCAGGAT
GAGGAGAGCT GGGAGAAGGA ATTCGCGACT GACATGATGG GCACGGTGCG TCTGGTCGAC
GCGGCGATGC CGTATCTCGA GAAGAGCCAG GCCGCGGCGA TCGTCACCAT CTCCAGCGTG
TCGGGGCGCG AGGTCGATTT CGCCAGCGGG CCTTACGGCA CCTTCAAGGC TGCGATCATC
CACTACACCC AGGGTCTCGC CTTTCAGCTC GCGCCGAAGA ACATCCGCGC CAATTCGGTG
TCGCCCGGCA ATACGTATTT CGAGGGCGGC GTCTGGAACC AGATCAAGGA CAGCAACCCG
GAGCTCTACA ACACAGCGCT GGCGCTGAAT CCGACCGGGC GGATGGGCAC GCCACAGGAA
ATGGCGAACG CGGTGGTGTT CCTCGGGAGC CGCGCCGCGA GCTTCATCAC CGGCACCAAT
CTGGTCGTTG ACGGCGCCTT GACGCGCGGC GTGCAGTTCT AA
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| Protein sequence | MDLGLKGAKV LVTGSTKGIG RAVAETFAAE GADVGICARN QADVDSTVAS LRSKGVSAFG
GAVDVSNGPA LKAWVADMAS KLGGVDVVVA NVSALAIGQD EESWEKEFAT DMMGTVRLVD
AAMPYLEKSQ AAAIVTISSV SGREVDFASG PYGTFKAAII HYTQGLAFQL APKNIRANSV
SPGNTYFEGG VWNQIKDSNP ELYNTALALN PTGRMGTPQE MANAVVFLGS RAASFITGTN
LVVDGALTRG VQF
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