Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4225 |
Symbol | |
ID | 4024746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4690648 |
End bp | 4692768 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637964431 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_571343 |
Protein GI | 91978684 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.450059 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGCAGC CAGAAGCCAC GGTCGAACAC GGGCCGGCAC CGGTCAAGGT CGAGTTCGAC AATTTCGAGC ACGGCTTTCC GGCGGGGTTC GGCCCGCGCG GCTGGAGCCA TCTGGCGTAC ATGGTGGCGA TCGCGTTCGC GACCTTCCAA CTGGTGATCG CGGCGTGGAA CGTGCTGCCG AGCCAGGTCG TGCGCGGCGT GCATGTCGGC TTCCTGATCC TGCTCACCTT CGGCCTGCTC GGCAATTTCA CCGCGCGTAC TGATTTGGGC CGCGTTTTCG CCTGGCTGGT CGGCGCGCTC GGCTTCCTGT GCGGGCTGTA TCAATGGTTC TTCTACGCCG ACCTGATCGC GCGCGACGGC GATCCCACCC AGCTTGATCT CGTCGTCGGG ACGCTGCTCG CAGTGCTGAT TTTCGAGGGC ACGCGGCGGC TGATGGGCTC GGCGCTGCCG ATCATGTGCG GTGTCTGTCT GGTGTACTGG TTCTTCGGCC AGTATCTGCC GGCGCCATTG AACCACCGCG GCTATGATTT CGACCAGGTC GTCACCCATC TGTCGTTCGG CACCGAGGGC TTCTATGGTG TGCCGATCTA CGTGTCGGCG ACCTATATTT TCCTGTTCAT CCTGTTCGGC TCGTTCCTCG AGCGCGCCGG CATGATCCAG TTGTTCACCG ACGTGTCGCT CGGCCTGTTC GGTCGCAGCC GCGGCGGCCC GGCCAAGGTC GCGGTGTTCG CCTCGGGCAT GATGGGCACG ATCTCCGGCT CCGGCGTGGC GAATGTCGTC ACCGTCGGCC AGTTCACCAT TCCGCTGATG ATCAAGTTCG GCTATCGCCG CGCCTTCGCC GCCGGCGTCG AGGCCACCGC CTCGATGGGC GGGCAGATCA TGCCGCCGGT GATGGGCGCG GTCGCCTTCA TCATGGCCGA GACGCTCGGC GTCGACTATT CGGTGATCGT CAAGGCCGCG GTGATCCCGG CATTCCTGTA CTTCGCCTCG GCGTTCTGGA TGGTGCATCT CGAGGCCGGC AAGCACGGGC TGGTCGGGAT GAAGAAGTCG GAAATCCCGA GCGCCTGGCG GGCGGTGGTC GATCGCTGGT ACCTTGTCCT GCCGCTCGTC GCGCTGGTGT TCATGCTGTT CGAGGGCTTC ACGCCGCTCT ATGCCGGCTC GATGGGCCTG GCGCTGACGG TGACGCTGAT CCTCGGCGCC AGCATCGTGC ACGGCTTCTC CAGCCAGGTG CTGCGCTACG TGTTCTGGAT CGGGCTGGCG CTTGTGGTCG GCGCAGTGTC GCATAATGGG CTCGACATCA TGCGGATCGT CCTGATCGTC GCCGCGCTGA TTGCGATCAC GGCGGTCACG CGTGGCGGCC GCGCCACCCT GGCGGCGTGC CGCGATTCGC TCGCCGACAG CGCCAAATCG GCGCTCACCG TCGGCATGGC CTGCGCCATC GTCGGCACCA TCATCGGCAT GATGACCCAG ACCGGCGTCG GCACCATTTT CGGCGGCTGG GTGATCGGGC TCGGCGAGAA GAGCCTGTTC CTGGCGCTGA TCATGACGAT GCTGCTGTCG ATCCTGCTCG GCACCGGCAT CCCGACGATC CCGACCTACA TCATCACCGC GGCGCTGGCC GCGCCGGCGC TGGCGAAGCT CGGCGTGCCG CTGATCGTCA GCCACATGTT CGCGTTCTAC TACGGCATCA TGGCGGACCT GTCGCCGCCG GTCGCCCTGG CGGCGCTGGC GGCGGCGCCG ATCGCCCGCG AGAATCCCGA CAAGATCGGC TGGGAAGCGA TGCGGATCGC GCTCGCCGGC TACGTCATCC CGTTCATCGC GGTGTATTCG CCGGCGCTGA TGCTGCAGCC CGGCGATCCG ATGGCGGCCG AACTCGGCTT CTACGGCGCG GTGGTCTATG CCACCGTGAA GGCGCTGGTC GCGATCGCGC TGTTCGGCAT GGTCGCGATC GGCTTCCTGT ACACGCGGAT GACGGTGATC GAGCGCGTCG TCGCCTTCGC CGCCAGCATC TGCCTGCTCG GCGAGTTTCC CTATAGCGAC TATTTCGGCT TCATCGTCGC GGCGCTGGTC GTGGTGTGGC AATGGCGGCA GCGGCCGCGC AACGCGATCG CCGCGGCGTG A
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Protein sequence | MLQPEATVEH GPAPVKVEFD NFEHGFPAGF GPRGWSHLAY MVAIAFATFQ LVIAAWNVLP SQVVRGVHVG FLILLTFGLL GNFTARTDLG RVFAWLVGAL GFLCGLYQWF FYADLIARDG DPTQLDLVVG TLLAVLIFEG TRRLMGSALP IMCGVCLVYW FFGQYLPAPL NHRGYDFDQV VTHLSFGTEG FYGVPIYVSA TYIFLFILFG SFLERAGMIQ LFTDVSLGLF GRSRGGPAKV AVFASGMMGT ISGSGVANVV TVGQFTIPLM IKFGYRRAFA AGVEATASMG GQIMPPVMGA VAFIMAETLG VDYSVIVKAA VIPAFLYFAS AFWMVHLEAG KHGLVGMKKS EIPSAWRAVV DRWYLVLPLV ALVFMLFEGF TPLYAGSMGL ALTVTLILGA SIVHGFSSQV LRYVFWIGLA LVVGAVSHNG LDIMRIVLIV AALIAITAVT RGGRATLAAC RDSLADSAKS ALTVGMACAI VGTIIGMMTQ TGVGTIFGGW VIGLGEKSLF LALIMTMLLS ILLGTGIPTI PTYIITAALA APALAKLGVP LIVSHMFAFY YGIMADLSPP VALAALAAAP IARENPDKIG WEAMRIALAG YVIPFIAVYS PALMLQPGDP MAAELGFYGA VVYATVKALV AIALFGMVAI GFLYTRMTVI ERVVAFAASI CLLGEFPYSD YFGFIVAALV VVWQWRQRPR NAIAAA
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