| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4150 |
|---|
| Symbol | |
|---|
| ID | 4024672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4621554 |
|---|
| End bp | 4622237 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637964358 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_571270 |
|---|
| Protein GI | 91978611 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | [TIGR02796] TolQ protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00529693 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTGG TATCCGCCGA CGTTTCGCTG ATCGCGTTGT TCTGGCAGGC CCACTGGATC
GTCAAATCGG TGATGCTGGG ACTGATCGGC TGCTCGGTCT GGGTCTGGGC GATCGCGATC
GACAAGCTGC TGCTCTATTC GCGTACCAAG CGCGCGATGG ATCGCTTCGA GCAGGCGTTC
TGGTCGGGAG AGTCGATCGA TGACCTGTAC CGCACCCTGT CAGCCAAGCC GACGCATTCG
ATGGCGGCCT GTTTCGTCGC CGCGATGCGC GAGTGGAAAC GCTCGTTCGA AAGCCAATCG
CGTTCCTTCG CCGGCTTGCA GATGCGGATC GAGAAGGTGA TGAACGTTTC GATCGCGCGC
GAGGTCGAGC GGTTGGAGCG GCGTCTGCTG GTGCTGGCGA CAGTCGGTTC GGCCGGACCC
TTCGTCGGCC TGTTCGGCAC CGTCTGGGGC ATCATGTCGA GCTTCCAGTC GATCGCCGCG
TCCAAGAACA CCTCGCTGGC GGTGGTCGCG CCCGGCATCG CCGAGGCGCT GTTCGCGACC
GCCGTCGGCC TGATCGCCGC AATTCCGGCG ACAATTTTCT ATAACAAGTT CACATCCGAA
GTGAACCGCC AGACCCAGCG GCTGGAGGGT TTCGCGGACG AGTTCTCGGC CATCCTGTCG
CGACAGATCG ACGAACGCGC ATGA
|
|---|
| Protein sequence | MPLVSADVSL IALFWQAHWI VKSVMLGLIG CSVWVWAIAI DKLLLYSRTK RAMDRFEQAF
WSGESIDDLY RTLSAKPTHS MAACFVAAMR EWKRSFESQS RSFAGLQMRI EKVMNVSIAR
EVERLERRLL VLATVGSAGP FVGLFGTVWG IMSSFQSIAA SKNTSLAVVA PGIAEALFAT
AVGLIAAIPA TIFYNKFTSE VNRQTQRLEG FADEFSAILS RQIDERA
|
|---|
| |