| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3987 |
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| Symbol | |
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| ID | 4024504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4435092 |
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| End bp | 4438235 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637964190 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_571107 |
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| Protein GI | 91978448 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.584236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA CTCCCGACAA ACCCTCACAG CCGAAATCGA AAGCGCCGAA ATCCAAGGCG
CCGAATTCCA AAGCCCACCG GCCCGACGTC AAACCGATCG GGCCGGCGCT GGCGGAACTG
CTCAATCCCG CGATCAATCG CGGCGACGCC GGCATGGGCT CGGGCACCGG GCTGCAGCCG
CCGCCGGACA ATTCGCGCGA CCGCCGCACC GGCGGCGAAG CCGCGATGCA TCGCGGCCGG
GCCTCGACGC CCAAGGCTTT CGGCGACGAG GCCGCGCCGC GCGCGATGCC GCTGCGGCCG
AATCCGCAGC CGGTCGGCGG GCGATCGTCC GCATCGCAAG TGCCCGCACC CAACCCTCCC
CCGCAAGCGG GAGAGGGCTC CGCGCGGCAG GCGCCGGGGG AACACGTCAG CGATCATTTC
GCGGAGGGGC AACCATCGCC GCCTCTCCCG CTTGCGGGGG ATGGTCGGGG TAGGGGCGCC
GCGGGCAATG ACACGCGAGG CTTCGACGAA GCCCCGCAAG CCACCTACGG CACCGCCGCC
ACCATCCCGA CGCTCGATCC CGAGCTGGCG CGGCAACTCG GGCTGCCGAC CGAGGAAGAC
GACGAGGCCG CGATGGCGCG GCCGCCGCGC AACAAGATGG AGGCGCTCGG CGTGCAGGCC
ACCGCCGAGG CGCTGGAGAA TCTGATCCGC GAGGGCCGGC CGGAATTCAA GGGCGACGAT
GGCGGCGTCA AGCTGTGGGT GCCGCATCGC CCGCCGCGAC CGGAGAAATC CGAAGGCGGC
GTCCGCTTCG TCATCAAGTC GGAATACGAG CCGAAGGGCG ACCAGCCGAC CGCGATCAAG
GAACTGGTCG AAGGCATCGA CCGCAATGAC CGAACGCAGG TGCTGCTCGG CGTCACCGGC
TCGGGCAAGA CCTACACCAT GGCCAAGGTG ATCGAGGCGA CGCAGCGGCC GGCGATCATC
CTGGCGCCGA ACAAGACGCT GGCGGCGCAG CTCTACGGCG AGTTCAAGAG CTTCTTCCCG
GACAACGCGG TCGAGTATTT CGTCTCGTAT TACGACTACT ATCAGCCGGA AGCCTACGTT
CCGCGCACCG ACACCTATAT CGAGAAGGAC TCCTCGATCA ACGAGCAGAT CGACCGGATG
CGGCATTCGG CGACGCGCGC CCTCTTGGAG CGCGACGACG TCATCATCGT TGCGTCAGTG
TCGTGCATCT ACGGTATCGG CTCGGTCGAG ACCTATACGG CGATGACCTT CGCGCTGAAG
AAGGGCGAGC GGATCGACCA GCGCCAGTTG ATCGCCGATC TGGTGGCGCT GCAATACAAG
CGGACGCAGG CCGACTTCAC CCGCGGCACC TTCCGGGTGC GCGGCGACGT CATCGACATC
TTCCCGGCGC ACTACGAGGA CCGCGCCTGG CGCGTCGGCC TGTTCGGCGA CACGGTCGAG
ACCATCGAGG AATTCGACCC GCTCACCGGG CACAAGCAGG ACGAGCTGGA ATTCGTCAAG
ATCTACGCCA ATTCGCATTA CGTGACGCCG CGGCCGACGC TGATCCAGGC GATCAAGTCG
ATCAAATCCG AGCTGAAATG GCGGCTCGAT CAGTTGCACG CGCAGGGCCG CCTCTTGGAA
GCGCAGCGGC TGGAGCAACG CACCACTTTC GACATCGAGA TGATGGAAGC GACCGGCTCT
TGCGCCGGCA TCGAGAACTA CTCGCGCTAT CTCACCGGCC GCCGCCCCGG CGAGCCGCCG
CCGACGCTGT TCGAATACGT GCCCGACAAC GCGCTGGTGT TCGCCGACGA AAGCCACGTC
ACCGTGCCGC AGATCGGCGG CATGTTCAAA GGCGACTTCC GGCGCAAGGC GACGCTGGCC
GAATACGGCT TCCGGCTACC GTCCTGCATG GACAATCGGC CGCTGCGCTT TGAAGAATGG
GACATGATGC GCCCGCAATC GGTCGCGGTG TCGGCGACCC CGGCGGCGTG GGAGCTGAAC
GAAAGCGGCG GCGTGTTCGT CGAGCAGGTG ATCCGCCCGA CCGGGCTGAT CGACCCGCCG
GTCGACATCC GCCCGGCGCG CACCCAGGTC GACGATCTGG TCGGCGAAGT CCGCGCCACC
GCGCAGGCCG GCTATCGCTC GCTGATCACC GTGCTGACCA AGCGGATGGC GGAGGACCTC
ACGGAGTTTC TGCACGAGCA GGGAATCCGC GTACGCTACA TGCATTCCGA CATCGACACC
ATCGAGCGCA TCGAGATCAT CCGCGATCTG CGGCTCGGCG CGTTCGACGC GCTGGTCGGC
ATCAATCTGT TGCGCGAGGG CCTCGACATT CCGGAATGCG CGCTGGTGGC GATCCTCGAC
GCCGACAAGG AAGGCTTTTT GCGCAGCGAG ACGTCACTGA TCCAAACGAT CGGCCGCGCC
GCGCGAAACG TCGACGGCAA GGTGATCCTC TATGCCGATC ACGTCACCGG CTCGATGCAG
CGGGCGATGG ACGAGACCGG TCGCCGTCGT GAGAAGCAGA TCGAATACAA CACCGCGCAC
GGCATCACGC CGGAGAGCAT CAAGAAATCG ATCGGCGATA TTCTGGGCTC GGTTTACGAG
CGCGACCATG TGCTGGTGGA GATCGGCGAC GGCAAGGGCT CGGGCTTCAC CGACGACGCC
GCGGTGATCG GGCACAATTT CGGCGCGGTG CTGGCCGACC TCGAAACCAG GATGCGCGAG
GCGGCGGCCG ATCTGAACTT CGAGGAAGCC GCAAGGCTGC GTGACGAAGT CAAACGCCTG
CGCGCCACCG AACTCGCGGT GATCGACGAC CCCACCGTCA AGCAACGCGG CGTCGCGGCG
AAAGCCGGGA GCTACAAGGG CGACAAACAA TTCGGCGCCT CGGCCAATCT GCCGAAGCTG
TCGACCGAAC GCGGCGGCAA CAACACCCCG CGCAGCAAGG TGCACAAACC CGATCTCGAC
GAAATGGGCA TCGCCGGCTG GCACGAGATC AAGAAGGTGC AACGGCCCAA GCCGCGCAAA
CCGACGCTCG ACGAGATGGG CCCGGGTGCG GAGAGCAAGA TCTATCAGCC GACCAACAGC
CGCGAGTCCG GGCCGGAATT CGGTCCCGCG CCGCGCAGCA GCGGCGGCGC GCCGGGGCAT
CGGGGCGGGT GGAAGAAGAG GTAG
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| Protein sequence | MAKTPDKPSQ PKSKAPKSKA PNSKAHRPDV KPIGPALAEL LNPAINRGDA GMGSGTGLQP
PPDNSRDRRT GGEAAMHRGR ASTPKAFGDE AAPRAMPLRP NPQPVGGRSS ASQVPAPNPP
PQAGEGSARQ APGEHVSDHF AEGQPSPPLP LAGDGRGRGA AGNDTRGFDE APQATYGTAA
TIPTLDPELA RQLGLPTEED DEAAMARPPR NKMEALGVQA TAEALENLIR EGRPEFKGDD
GGVKLWVPHR PPRPEKSEGG VRFVIKSEYE PKGDQPTAIK ELVEGIDRND RTQVLLGVTG
SGKTYTMAKV IEATQRPAII LAPNKTLAAQ LYGEFKSFFP DNAVEYFVSY YDYYQPEAYV
PRTDTYIEKD SSINEQIDRM RHSATRALLE RDDVIIVASV SCIYGIGSVE TYTAMTFALK
KGERIDQRQL IADLVALQYK RTQADFTRGT FRVRGDVIDI FPAHYEDRAW RVGLFGDTVE
TIEEFDPLTG HKQDELEFVK IYANSHYVTP RPTLIQAIKS IKSELKWRLD QLHAQGRLLE
AQRLEQRTTF DIEMMEATGS CAGIENYSRY LTGRRPGEPP PTLFEYVPDN ALVFADESHV
TVPQIGGMFK GDFRRKATLA EYGFRLPSCM DNRPLRFEEW DMMRPQSVAV SATPAAWELN
ESGGVFVEQV IRPTGLIDPP VDIRPARTQV DDLVGEVRAT AQAGYRSLIT VLTKRMAEDL
TEFLHEQGIR VRYMHSDIDT IERIEIIRDL RLGAFDALVG INLLREGLDI PECALVAILD
ADKEGFLRSE TSLIQTIGRA ARNVDGKVIL YADHVTGSMQ RAMDETGRRR EKQIEYNTAH
GITPESIKKS IGDILGSVYE RDHVLVEIGD GKGSGFTDDA AVIGHNFGAV LADLETRMRE
AAADLNFEEA ARLRDEVKRL RATELAVIDD PTVKQRGVAA KAGSYKGDKQ FGASANLPKL
STERGGNNTP RSKVHKPDLD EMGIAGWHEI KKVQRPKPRK PTLDEMGPGA ESKIYQPTNS
RESGPEFGPA PRSSGGAPGH RGGWKKR
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