Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3811 |
Symbol | |
ID | 4024327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4252077 |
End bp | 4252904 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637964015 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_570933 |
Protein GI | 91978274 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.077529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAC TGCAAGGAAA GGTGGCGCTG GTCACCGGAT CGGGCCGCGG CATCGGCCGC GCGATCGCAC TGAAGCTCGC GTCGGAAGGC GCGCGGGTCG TGATCAACGA CCTCGACGAC GAGCCGGGTG ATGCTGTGGC GGCCGAGATC AAGGCCCGCG GTGGCGAGGC GATCGCGATC AACGGCAGCG TCTCCGAGGC AGGCTTCGCC GACCGTTTCG TCGGCGCGGC GGTCGAAGAA TTCGGCGGTC TCGACATCAT CGTCAACAAC GCCGGCTACA CCTGGGACTC GACCATCCAG AAGATGACCG ACGAGCAATT CCAGGCGATG CTCGACGTGC ATCTGGTGGC GCCGTTCCGC ATCCTGCGCG CCGCCGCCGA GCCGATCCGG ATCTTCGCCA AGCAGGAGGC CGAGGCCGGG CGCGAGGTGT TCCGCAAGGT GGTGAACATC TCGTCGATCG CCGGACTTTA CGGCAATGCC GGCCAGGCGA GCTATTCTTC TGCCAAGGCG TCGCTGGTCG GCCTGACGCG GACGATGTGC AAGGAGTGGG GCCGTTACAA GGTCAACGTC AATTGCGTGG CGTTCGGCCT GATCAACACA AGGCTGACCC AGCCGATCGA AGCGCAGCAG AAGACCATCG ACGTCGCTGG TCGCGACATC AAGGTCGGTG TCCAGCCGCA GATGCTGGAT GCGATGGCGC GGATGATCCC GCTCGGCCGC GGCGGTACGG CCGAAGAGGC CGCGGACGCG GTCTATCTGT TCTGCAGCCC GGAATCCAAC TACATCAGTG GTCAGGTCGT CGTCTGCGGC GGCGGGCTCA TCATTTAA
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Protein sequence | MSKLQGKVAL VTGSGRGIGR AIALKLASEG ARVVINDLDD EPGDAVAAEI KARGGEAIAI NGSVSEAGFA DRFVGAAVEE FGGLDIIVNN AGYTWDSTIQ KMTDEQFQAM LDVHLVAPFR ILRAAAEPIR IFAKQEAEAG REVFRKVVNI SSIAGLYGNA GQASYSSAKA SLVGLTRTMC KEWGRYKVNV NCVAFGLINT RLTQPIEAQQ KTIDVAGRDI KVGVQPQMLD AMARMIPLGR GGTAEEAADA VYLFCSPESN YISGQVVVCG GGLII
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