| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3525 |
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| Symbol | |
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| ID | 4024039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3913791 |
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| End bp | 3914765 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963729 |
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| Product | type II secretion system protein |
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| Protein accession | YP_570649 |
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| Protein GI | 91977990 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.359223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATT TTCTCGTTGC GAAGCTGCAC GACGCCCGCT TCATGACCAT GTTTCTGGCG
GCGATCGCTG CCAGCGCCAC GGTCTACACG CTGGTCATAC CGCTGTTCGT CGGCGAGACG
TTGGCCAAGC GCATGAAGGC GGTCGGCAGC GAGCGTGAGC GGATCCGCCA GCGCGAGCGC
GACCGTATAG CGAAGGCCGA ACGTGTGTCG CTGCGGCAAG CGCCGAAGCA GTTCGTCGCC
AAGGTCGTCG AGGATCTCAA CCTCGGCAAA TGGGTCGCCC AGGAAACCGC ACGCGACAAG
CTGGTGATGG CCGGCTATCG CGGCCAGGCG CCCTATGTCA CCTTCCTTTT CTTCCGCATG
GTGATGCCGA TCGCGTTCGG CATCGCATCG GCCCTCTACG TCTTCCTGCT GTCGAACATG
CAGCAATCGA CCTCGATCAA GATCGGCATG TGCATCGCCG GCGTGTTTCT CGGCATGCAG
GCGCCGATGC TGTTCCTGAA GAACGCCATC AGCAAGCGCC AACTCTCGAT CAAGCGCGCC
TTTCCCGACG CGCTCGACCT GCTGCTGATC TGCATCGAGT CCGGCATGTC GATCGAAGCC
GCATTCCGCA AGGTCTCGAT CGAAATCGGC ACGCAGTCGA TCCCGCTGGC GGAGGAGCTG
ACGCTGACGA CGGCGGAGCT GTCCTATCTG CCCGACCGCA AGCAGGCCTA CGAAAACCTC
GCGATCCGCA CCGGCCTCGA GGGCGTCAAG TCGGTCTGCC TGGCGCTGCA GCAATCGGAA
CGCTACGGCA CGCCGCTCAG CCAGAGCCTC CGCGTGATGG CGCAGGAAAA TCGCGACATG
CGCATGAACG AGGCCGAGAA GAAGGCCGCC GCGCTGCCGC CGAAGCTGAC GGTGCCGATG
ATCGTGTTCT TCCTGCCGGT TCTGTTCGTC GTGATCCTCG GGCCGACCGG GATCAGGGTT
TCGGCGATGC AGTGA
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| Protein sequence | MIDFLVAKLH DARFMTMFLA AIAASATVYT LVIPLFVGET LAKRMKAVGS ERERIRQRER
DRIAKAERVS LRQAPKQFVA KVVEDLNLGK WVAQETARDK LVMAGYRGQA PYVTFLFFRM
VMPIAFGIAS ALYVFLLSNM QQSTSIKIGM CIAGVFLGMQ APMLFLKNAI SKRQLSIKRA
FPDALDLLLI CIESGMSIEA AFRKVSIEIG TQSIPLAEEL TLTTAELSYL PDRKQAYENL
AIRTGLEGVK SVCLALQQSE RYGTPLSQSL RVMAQENRDM RMNEAEKKAA ALPPKLTVPM
IVFFLPVLFV VILGPTGIRV SAMQ
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