| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3485 |
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| Symbol | |
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| ID | 4023999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3872696 |
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| End bp | 3874774 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963689 |
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| Product | glycogen debranching protein GlgX |
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| Protein accession | YP_570609 |
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| Protein GI | 91977950 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTCA CTGCCGGAAC TTCCTCCCGA CTCGGGGCCA CCTGGGACGG GCGCGGAACT
AATTTTGCAT TGTTCTCAGC CAATGCGCAC AAGGTCGAAC TCTGCCTGTT CGACGCCCAA
GGCCGCCGCG AGCTCGAGCG CATCGAATTA CCAGAGCGAA CCGAAGAGGT CTGGCACGGT
TATCTCAACG ACGTCTCTCC CGGCCAGCTC TACGGCTATC GCGTGCACGG CCCATACGAT
CCCGAACGCG GCCACCGGTT CAACGCCCAC AAGCTTTTGC TCGATCCCTA CGCCAAGCGG
CTGTTCGGTC GGCTGGTATG GAGCGACGCG CATTTCGCCT ATCGTCCCGG AAGTCCGCGC
GAGGATTTGT CGTTCGACCG CCGCGACAAT GCGCGCGGAA TGCCGAAGGC CGTGGTGGTC
GACGAGACTG GCGGATTCTC GCGCTATGAG AGCCGGCCCG GCATCCCGTG GGAAGACACC
ATCATCTACG AGGCCCATGT CAAAGGCCTG ACGCAGTTGC ACCAAGACGT GCCACCGGGC
CTGCGCGGCA CCTTCGGCGG CCTCGCTTCG CCGACGATGA TCGATCATTT CAAGCGGCTC
GGCGTCACCG CGATTGAACT TCTCCCGGTC CAAGCGCTTA TCGATGACCG AATTCTGGTC
GAGAACAAGC TGGTGAATTA CTGGGGCTAC AATACGATCT CTTTCTTCGC GCCGGAGCCG
CGCTACGCGC CGGACAATCC GCTCGACGCG TTCCGCACCA CGGTGGCGCG GCTGCACGAC
GCCGGCATCG AAGTGATCCT CGACGTGGTC TACAACCACA CCGCCGAGGG CAATCATCTC
GGCCCGACGC TTTCGTTCCG CGGCATCGAC AACGCCTCGT ATTATTGGCT GATGCCGGAC
AATCCCCGCT ATTACGACGA CTTCACCGGC TGCGGCAGCT CGGTCAATCT CAGCCACCCG
CGCGTCTTGC AGATGGTGAT GGATAGCTTG CGCTACTGGG TCGAGGTCTG CCATGTCGAC
GGCTTCCGCT TCGACCTCGC CACCACGCTG GCGCGCGGCC CGAACGGCTT CGAGCGCAAC
TCCGGGTTTT TCACGGCGAT CCGACAGGAT CCGGTGCTCG CCTCGGTGAA GCTGATCGCC
GAGCCGTGGG ACCTCGGCAT GGGCGGTTAC CAGGTCGGCG CTTTTCCGTC GCAATGGTCG
GAGTGGAACG ACCGCTATCG CAGCGCGATG CGGCGCTATT GGAGCGGCGA AGGCAGCCTG
ATCGGCGAAG TGTCGCGGCG GATGACGGGC TCCTCCGACA TCTTCAATCA TGACGGCCGG
ATGCCGCGCG CAAGCATCAA CCACGTCACC GTCCATGACG GCTTCACGCT GGCCGACCTG
TTCAGCTACA ACGAGAAACA CAACCTCGCC AATGGCGAGG ATAATCGCGA CGGCTCCAAC
GACAATCACA GCAATAATTG CGGCCATGAA GGCCCGACCG ACGATCCGGA GATCGTTGCA
CTGCGCCGTC AGCTCCGCAA GAATCAGCTC GCCTGTCTGT TTCTCGCCCA GGGCGTTCCG
CTGATGCTCG CCGGCGACGA GGTGGGGAAT TCGCAGAACG GCAACAACAA CGCCTACTGC
CAGGACAACG AGATCGGATG GGTCAAATGG GACGGGCTCA ATCGCGAAGG TGACGACCTG
GTCGACTTCA TCGGGCTGAT GACCGACGTG CGCAGCCGCT TTCCGCAATT GCGCACGCGT
CGCTGGCTGG ATGGCCGCCG CGCCGACGGC TCCTACGGCG TGCTGTGGCT GACGCCGTCC
GCCGCCGAGA TGACCGAGCA GGATTGGGCA TTTCCCGACG GCCGTTTCCT CGCTTACGTG
CTGAGCCCTT CCGAGCCTTC GGCCGACGCG ATCTTCATCG TGCTGAATTC TGGCGTGGAG
ACGATCCCGT TTCATCTGCC GAGACTGCCC GAATATCAGA TCTGGCATCA GTTGTTCGAC
ACCAGCCGGG ACACCGTCCA GGTCGCCCCA TTGCCATCCG GCAGCCAGAC CTCCGCGCCG
CCGCGCTCGG TGATGGCATT CTCCGGAGAG GGCGTATGA
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| Protein sequence | MRLTAGTSSR LGATWDGRGT NFALFSANAH KVELCLFDAQ GRRELERIEL PERTEEVWHG
YLNDVSPGQL YGYRVHGPYD PERGHRFNAH KLLLDPYAKR LFGRLVWSDA HFAYRPGSPR
EDLSFDRRDN ARGMPKAVVV DETGGFSRYE SRPGIPWEDT IIYEAHVKGL TQLHQDVPPG
LRGTFGGLAS PTMIDHFKRL GVTAIELLPV QALIDDRILV ENKLVNYWGY NTISFFAPEP
RYAPDNPLDA FRTTVARLHD AGIEVILDVV YNHTAEGNHL GPTLSFRGID NASYYWLMPD
NPRYYDDFTG CGSSVNLSHP RVLQMVMDSL RYWVEVCHVD GFRFDLATTL ARGPNGFERN
SGFFTAIRQD PVLASVKLIA EPWDLGMGGY QVGAFPSQWS EWNDRYRSAM RRYWSGEGSL
IGEVSRRMTG SSDIFNHDGR MPRASINHVT VHDGFTLADL FSYNEKHNLA NGEDNRDGSN
DNHSNNCGHE GPTDDPEIVA LRRQLRKNQL ACLFLAQGVP LMLAGDEVGN SQNGNNNAYC
QDNEIGWVKW DGLNREGDDL VDFIGLMTDV RSRFPQLRTR RWLDGRRADG SYGVLWLTPS
AAEMTEQDWA FPDGRFLAYV LSPSEPSADA IFIVLNSGVE TIPFHLPRLP EYQIWHQLFD
TSRDTVQVAP LPSGSQTSAP PRSVMAFSGE GV
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