Gene RPD_3397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3397 
SymbolmraY 
ID4023909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3775185 
End bp3776270 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content64% 
IMG OID637963602 
Productphospho-N-acetylmuramoyl-pentapeptide- transferase 
Protein accessionYP_570522 
Protein GI91977863 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 
TIGRFAM ID[TIGR00445] phospho-N-acetylmuramoyl-pentapeptide-transferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.186166 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.455844 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTACT GGCTGATCGA TCTTTCCAGC TCAATTCCGG CGTTCAACGT CTTCCGCTAC 
ATCACCTTCC GAACCGGCGG CGCGGTGGTG ACCGGTGCAC TGTTCGTGTT CCTGTGCGGA
CCGTGGATCA TCAACAATCT GCGGCTGCGC CAGGGCAAGG GCCAGCCGAT CCGCAGCGAC
GGGCCGCAAT CGCATCTCGT CACCAAGAAG GGCACGCCGA CGATGGGCGG CCTGATGATC
CTGTCGGGGC TGACGGTCGG CACGGTGCTG TGGGCCAATC CGGTCAATCC CTATGTCTGG
ATCGTGCTGG CGGTGACGCT CGGCTTCGGC TTCGTCGGCT TCTACGACGA CTACATGAAA
GTGACCAAGC AGACCCATGC CGGCATCTCC GGCCGAACCA GGCTGCTGAT CGAATTCGCG
ATCGCCGGCG CCGCGTGCTT CGCGCTGGTG TGGCTCGGCC GCAGCTCGCT GTCGAGCTCG
CTGGTGATTC CGTTCTTCAA GGAAGTCGTG CTCAATCTCG GCTGGTACTT CGTGATCTTC
GGCGCGTTCG TCATTGTCGG CGCCGGCAAT GCGGTGAACT TGACCGACGG CCTCGACGGC
CTCGCGATCG TGCCGGTGAT GATCGCGGCC GCGAGCTTCG GACTGATCGC CTATCTCGCC
GGCAACGCGG TGTTCGCCGA TTATCTGCAG ATCAACTACG TCGCCGGCAC CGGCGAACTG
GCGGTGCTGT GCGGCGCGCT GCTCGGCGCC GGCCTCGGAT TTCTGTGGTT CAACGCGCCG
CCGGCCTCGA TCTTCATGGG CGACACCGGC TCGCTGGCGC TCGGCGGGAT GTTGGGCTCG
ATCGCGGTGG CGGTGAAGCA CGAGATCGTG CTGGCGGTGA TCGGCGGGCT GTTCGTGCTC
GAAGCGGTGT CGGTGATCGT GCAGGTGGCA TCGTTCAAGC TGACCGGCAA GCGCGTCTTC
CGGATGGCGC CGATCCATCA TCATTTCGAG CAGAAGGGCT GGACCGAGCC GCAGATCGTG
ATCCGCTTCT GGATCATCGC CGTGATGCTG GCGCTGGCCG GCCTGGCGAC GCTGAAGCTG
CGGTGA
 
Protein sequence
MLYWLIDLSS SIPAFNVFRY ITFRTGGAVV TGALFVFLCG PWIINNLRLR QGKGQPIRSD 
GPQSHLVTKK GTPTMGGLMI LSGLTVGTVL WANPVNPYVW IVLAVTLGFG FVGFYDDYMK
VTKQTHAGIS GRTRLLIEFA IAGAACFALV WLGRSSLSSS LVIPFFKEVV LNLGWYFVIF
GAFVIVGAGN AVNLTDGLDG LAIVPVMIAA ASFGLIAYLA GNAVFADYLQ INYVAGTGEL
AVLCGALLGA GLGFLWFNAP PASIFMGDTG SLALGGMLGS IAVAVKHEIV LAVIGGLFVL
EAVSVIVQVA SFKLTGKRVF RMAPIHHHFE QKGWTEPQIV IRFWIIAVML ALAGLATLKL
R