| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3342 |
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| Symbol | |
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| ID | 4023853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3707053 |
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| End bp | 3708048 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963547 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_570467 |
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| Protein GI | 91977808 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.135191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT CGATCACAAT GGTCGTGGCC GCGCTCGGCG TCCTTGCGAT CGGCGCCGGT
GTCTTTGCCT ATGCGCCCGA CAAATCTGCA GCGCCTGTTG CCGACACGGC TGGAAAATCC
GGCCATGCGG AGAAGGGGCA TAGCGGGAAG GGACACGAGG ACGAAGGGCA CGCCGAAGAG
GATGTCGTGG AGATGACCGA TGCCAAGGTC GGCGCAGCGG GCATCGAGAT CCTGACCGTT
GCCGGGGCGA CGCTGCACGA TACGATCGTG CTCAACGGCA TCCTGACGCC CAATCAGGAA
ACCCTGGTCC AGGTCACTCC GAGGTTTCCG GGTGTCGTCC GGGAGATCAG GAAGCGTCTT
GGAGACACCG TCGAGAAGGG TGAGCTTCTC GCAAGGATCG AGAGCAACCA GAGCCTCACG
ACCTACGAGA TGCGCGCGCC GATCTCCGGC ACGGTGATCG ATCGCCAGAT CTCGCTCGGC
GAGTACGCCT CGGAGCAGAA GCCCGCCTTT ATCGTGGCCG ACATCTCGAC CGTCTGGGTG
GATCTGTCGG TGTACAAGCG CGATCTGCCC CGCGTGCGTC TCGGCGACAC CGTCATCATC
GACGTTGGTG ACGGCGGCAA GCCGATCGAA GCCCAGCTCT CCTACATGTC TCCGGTCGGC
AGCAGCGACA CGCAGAGCGC GCTGGTTCGT GCGGTGGTTG CGAACGACGC CGGGCGGCTG
CGTGCCGGCC TGTTCGTATC GGCACGTTTG ATCTTGTCCG CCAAGCAGGT GCCGATCGCG
GTCAAGGCCT CGGCGATCCA GTCGCTGGAG AACCGGAACG TCGTCTTCGT CCGGAACGGA
GCGAAATTCG AGGCCCGGGA GATCGAAATC GGCGGGCGGG ATTCGGAGAA CGTGGAGGTG
CTGTTCGGAT TGATGACCGG CGACAAATAC GCCGCCACCA ACAGCTTCGT CGTCAAGGCG
GAGATGGCGA AGGGAGCGGC GTCCCATGAT CACTGA
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| Protein sequence | MNKSITMVVA ALGVLAIGAG VFAYAPDKSA APVADTAGKS GHAEKGHSGK GHEDEGHAEE
DVVEMTDAKV GAAGIEILTV AGATLHDTIV LNGILTPNQE TLVQVTPRFP GVVREIRKRL
GDTVEKGELL ARIESNQSLT TYEMRAPISG TVIDRQISLG EYASEQKPAF IVADISTVWV
DLSVYKRDLP RVRLGDTVII DVGDGGKPIE AQLSYMSPVG SSDTQSALVR AVVANDAGRL
RAGLFVSARL ILSAKQVPIA VKASAIQSLE NRNVVFVRNG AKFEAREIEI GGRDSENVEV
LFGLMTGDKY AATNSFVVKA EMAKGAASHD H
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