| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3310 |
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| Symbol | |
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| ID | 4023820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3665141 |
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| End bp | 3666301 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963514 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_570435 |
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| Protein GI | 91977776 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.787615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGAC GGTTTGGTCC GCTGGCGACC ATCGCCATCT CGTGCGCCGT TTTCGTCACC
ACCGGCGCGG CGGCAGATGA GCCGAAGCTG CCGTCGACGA TGACGTTCAC CGCTTACGAC
ACCGGGACCG CCGGCTTCAA CATCGCGGTC GCGATCGGCA AGATGATGAA GGACAAATAC
AGCACCGACG TGCGCGTGCT GCCCGCCGGC AACGACGTCG CCCGCCTCGC GCCGCTGCGC
GCCGGCCGCG CCCAAATGGC CTGGATGGGG TCCGGCACGT ATTTCGCGCA AGAGGGCGTG
TTCGAGTTCG GCGCCAAGGA ATGGGGACCG CAGTCGCTGC AGATCTCGCT CAGCGTCGTC
GACTGCAGCG CGACATCGCT CGGCGTCGCC AAGGACGCCG GCGTCAAAGA GATCAAGGAT
CTGCGCGGCA AGCGCGTCGG CTTCGTGGTC GGCTCGCCGG CGGTGAACCA GAACACGCTC
GGCATCATCG CCTATGGCGG CCTCACCCAG AAGGACGTCA AGATCATCGA ATTCGCCAGC
TACGGCGCGA TGTGGAAGGG GCTGATCAAC AACGACGTCG ACGCCTCCTT CGGAACGACC
ATCACCGGCC CCGCGAAGGA GGTCGAGAAT TCGCCGCGCG GGTTGATGTG GCCGCCGATG
CCCCACGCCG ACAAGGCGGC CTGGGAACGC GTGATGAAAG TCGCGCCGTT CTTCAAGCCG
CATGTGTCGA CCTGCGGCGC GGCGCACGAG CCGGGCAAGC CGATCGAACT GTCGCACTAC
CCCTACCCGA TCGCGACCGT CTACGGCTCA CAGCCGGCCG ATCAGATCTA CGCGATCACC
AAATCGATGA TCGTCAACTA CGACACCTAT AAGGACAGCG CGCCGGGGGC CGCCGGGCTC
GCGGTGAAGA CACAGACGAT GAAATGGGTG GTCCCGTTCC ATCCCGGCGC AGTGAAGGCG
CTGCAGGAGG CCGGACAATG GAGTCCGGAG GATCAGACCC ACAATGACGG GCTGATCAAG
CGCCAGGGTG TGCTCGCCGC CGCGTGGAAG ACCTATGTGG GTTCGGCGCC GTCCGGCGAC
AAGGAGTTTC TCGACGGCTG GATGGCGGCG CGCGCGGCCG CGCTGAAGAA GGAAGCAATG
CCGAACGGCT TCGAGCAGTA A
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| Protein sequence | MIRRFGPLAT IAISCAVFVT TGAAADEPKL PSTMTFTAYD TGTAGFNIAV AIGKMMKDKY
STDVRVLPAG NDVARLAPLR AGRAQMAWMG SGTYFAQEGV FEFGAKEWGP QSLQISLSVV
DCSATSLGVA KDAGVKEIKD LRGKRVGFVV GSPAVNQNTL GIIAYGGLTQ KDVKIIEFAS
YGAMWKGLIN NDVDASFGTT ITGPAKEVEN SPRGLMWPPM PHADKAAWER VMKVAPFFKP
HVSTCGAAHE PGKPIELSHY PYPIATVYGS QPADQIYAIT KSMIVNYDTY KDSAPGAAGL
AVKTQTMKWV VPFHPGAVKA LQEAGQWSPE DQTHNDGLIK RQGVLAAAWK TYVGSAPSGD
KEFLDGWMAA RAAALKKEAM PNGFEQ
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