| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3085 |
|---|
| Symbol | |
|---|
| ID | 4023589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3429775 |
|---|
| End bp | 3430446 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637963285 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_570212 |
|---|
| Protein GI | 91977553 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.355286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.26404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCGTTGA AGCCGAAGAC CGAGCCACGG CCCCTCGCTC CGGAGGCCAT CGTGGCTGCG
GCGATCGAGC TGATCGAGCA TGTGGGTGAA GCCGATTTCA GCCTGCGCAA GCTCGGCCAG
AAGCTCGGCT GCGATCCGAT GACGGTGCTC TATCACTTCA AATCCAAGGA CGGTCTGCTG
CGGGCGATGG CCGACCACCT CACCGCTCAG CTTCAAGCCT CCGACCCGAC GCTCGACTGG
CGCGGACGCC TGCGGGCGCT GGCGTTCGAG TATCGACGGG TGGCGCTGGC CTTTCCCTGC
ACCTTCGGCC TGATGTCCCG GTTCTGGACC ACCGGCCCGG CCGACTATCA GCACATCGAG
ACGGTCTACC AGGCGCTGGA GGAAGCCGGG TTCGGCGACC AGGACCTGGC AGAGGTAGGG
ATCGGCTGGT ACGCGACCGT GATCGGTCTC GCTGCCGCCG AGGCCAGAGG CTTCCTGCGG
GTCGCCTGCG ACCTGGAAGC CCGCGAGATC ACCCAGCTCC CGGAGCCGTC ATTCGCCACG
GTGAGACGGC TGGTGCCGGC GTTTCGCCGT CTGAGCTCCG AGCGCAGCTA CCGGCTGATG
GTCGAGGTGG TGCTCGACGG CCTCGACAGC GCCGCGACGC GAAGACGGGC GCAGCCGAGG
GCGACAGCAT GA
|
|---|
| Protein sequence | MPLKPKTEPR PLAPEAIVAA AIELIEHVGE ADFSLRKLGQ KLGCDPMTVL YHFKSKDGLL
RAMADHLTAQ LQASDPTLDW RGRLRALAFE YRRVALAFPC TFGLMSRFWT TGPADYQHIE
TVYQALEEAG FGDQDLAEVG IGWYATVIGL AAAEARGFLR VACDLEAREI TQLPEPSFAT
VRRLVPAFRR LSSERSYRLM VEVVLDGLDS AATRRRAQPR ATA
|
|---|
| |