Gene RPD_3042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3042 
Symbol 
ID4023545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3389501 
End bp3390322 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content63% 
IMG OID637963241 
Producthypothetical protein 
Protein accessionYP_570169 
Protein GI91977510 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.539161 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.260589 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATGG TCGGCGCCGG CGCGTTGGGC GGAACGCCCG CGATCGCCAG TCCCAACGTC 
GCCTTCCTGC CGCATCAGGC GCTGTACGAC CTCAGCCTGC TGAAGACGCG CAACAACGCC
TCGGTCAACA CCGTCCGCGG CCGCATCCTG TACAATTTCT CCGGCAATGC CTGCGAGGGC
TATACCTCGG ACTTCCGCCA GGTCTCCGAG ATCGAGAGCG GCGAGGGCAA GAACACGCTG
AGCGACCTGC GCTCGTCGAG CTGGGAGGAC CCCGCCGGCA AGAGCTATCG CTTCAAGATC
GATACCAAGA TGAACGACTC TGATCCGACC GACGTCGACG GCGTCGCGGA GCGGACCGGC
GACACCATCA CCGTCAAGCT GAAGCAGCCG GTGCAAAAGA CCTTCACGCT CGACGGCAAG
ACGGTGTTTC CGACCGAGCA GATCGAACGC ATCATCGCCG CGGCGCGCGA CGGCAAGACG
TTGCTCGAGC TGCAGGTCTA TGACGGCTCG GACAATGGCG AGAAGGTCTA CAACACGCTG
ACCGTGATCG GGCAGGCGAT CCCCGGCGAC CGCGCCGGAT CTCCGCCGGA CCCGTCGACC
TCCGACGCCG CGATGAAGCC GCTGACGCGA TGGCCGGTGA CGGTGAGCTA CTACGATCAT
GAAGCCAAGG CGAATTCCGG TGAGCAGACG CCTGTCTATG CGATGTCGTT CGAGCTCTAC
GAGAACGGCG TGTCCCGCTC GCTGGTGCTC GACTACAATG ATTTCGTCCT GGCCGGCGCG
CTGGGCAAGT TCGATGTCAA ATCGAACAAG CCGTGTAAGT AG
 
Protein sequence
MTMVGAGALG GTPAIASPNV AFLPHQALYD LSLLKTRNNA SVNTVRGRIL YNFSGNACEG 
YTSDFRQVSE IESGEGKNTL SDLRSSSWED PAGKSYRFKI DTKMNDSDPT DVDGVAERTG
DTITVKLKQP VQKTFTLDGK TVFPTEQIER IIAAARDGKT LLELQVYDGS DNGEKVYNTL
TVIGQAIPGD RAGSPPDPST SDAAMKPLTR WPVTVSYYDH EAKANSGEQT PVYAMSFELY
ENGVSRSLVL DYNDFVLAGA LGKFDVKSNK PCK