| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2874 |
|---|
| Symbol | |
|---|
| ID | 4023372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3202783 |
|---|
| End bp | 3204876 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963072 |
|---|
| Product | NADH dehydrogenase subunit L |
|---|
| Protein accession | YP_570003 |
|---|
| Protein GI | 91977344 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.429312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.334086 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGG CTATCGTTTT CCTGCCGCTG ATCGGCGCAC TGATCGCGGC CGTCATCGCC
CTTGCCGGCG CCCATGCCCG ACACCCGAGC GGCGACACCG TCGAGCACAC CGATCATGGC
CACGGCCATG GCGCCGACGC GCACGGTCTC GATGCTCACG CACACGGCGA TACAGCGCAT
GAAGCCGGAC CTGACGATCG CGGCCATCAT CATGGCCCGG TCGAGCCGAT CGCGATGGGA
TCGCGCACCG CCGAGGTGAT CACCACCGCG CTGCTGCTGG TCTCGGCCGC GCTGTCCTGG
GTGACGCTGG TCGATGTCGG CTTCATGCAT CACGACGCCC GTGTCGCGCT GTTCCCGTGG
ATCAACTCCG GCGACCTTCA GGTCGCATGG TCGTTGCGGG TCGACACCCT GACCGCGGTG
ATGCTGGTGG TGGTGACGAC GGTGTCGTCG CTGGTTCACC TGTATTCGAT CGGCTACATG
CACGAGGATC CGCATCGGCC GCGGTTCTTC GGTTATCTGT CGCTGTTCAC CTTCGCGATG
CTGATGCTGG TGACTGCCGA CAATCTGGTG CAGATGTTCT TCGGCTGGGA AGGCGTCGGT
CTGGCGAGCT ATCTTCTGAT CGGATTCTGG TATCAGCGGC CGTCTGCGAA CGCCGCAGCA
ATCAAGGCCT TCGTCGTCAA CCGCGTCGGC GATTTCGGAT TTTACCTCGG CATCTTCTCG
GTCTTCATGC TGGTCGGCTC GACCGATTTC GAGACCATTT TCGCAGCCGC TCCCGGTCTG
ACCGGTAAGA CCATCAACTT CTTCGGCTGG CACGCCGATG CGCTGACCCT GATCTGCCTG
CTGCTGTTCA TGGGCGCGAT GGGCAAGTCG GCTCAGTTCC TGCTGCACAC CTGGCTGCCG
GACGCGATGG AAGGCCCGAC CCCGGTGTCG GCGCTGATCC ACGCCGCGAC CATGGTCACC
GCCGGCGTGT TCATGGTGGC CCGGCTGTCG CCGCTGTTCG AGCTTGCGCC GAATGCCCAG
GCCTTCGTGA TGCTGATCGG CGGCACCACC GCGCTGTTCG CGGCGACGGT CGGCCTGGTG
CAGAACGACA TCAAGCGGAT CGTGGCGTAT TCGACCTGCT CGCAGCTCGG CTACATGTTC
GTGGCGATGG GCGCCGGCGC CTATTCGGTC GGCATGTTCC ATCTGTTCAC GCACGCCTTC
TTCAAGGCGC TGCTGTTCTT GGGCGCGGGC TCGGTGATCC ATGCGATGCA TCACGAGCAG
GACATCCGCC ACATGGGCGG CCTGAAGAAC CGCATCCCGT TCACCTACAT CGTGATGGTG
ATCGGCACGC TGGCGCTGAC CGGCTTCCCG CTGACCGCCG GCTATTTCTC CAAGGACGCG
ATCATCGAGG CGGCCTACGT CTCGAAAAAT CCGATGGCGT TCTACGGCTT CGTCATGACG
GTCGTGGCGG CCCTGCTGAC CTCGTTCTAT TCGTGGCGGC TGATCTTCAA GACCTTCCAC
GGCGAGCCGC ACGACCAGAA GCACTATGAA GCCGCGCACG AAAGCCCGCT GACGATGACG
ATCCCGCTGT TCGTCCTCGC GGTCGGCGCG CTGGCGGCCG GCTATCCGTT CAAGGAGCTG
TTCGCCGGTC ACGGCATCGA GGAGTTCTTC CGCACCTCGC TGAAGATGCA TCCGGGCATC
ATCGAGGAGA TGCACCACAT CCCGGCCTCG ATTGCCTTGC TGCCGACGGT GATGATGGTG
GTGGGCTTCC TGGTGTCGTG GCTGTTCTAC ATCCGCCGAC CGTATCTGCC GGTCGAACTC
GCGGCCCAGC ACCCGCTGCT GTACAAATTC CTGCTCAACA AGTGGTACTT CGACGAGCTT
TACGAGGTGA TCTTCGTGCG GCCGGCGAAG TGGATCGGCC GCCAGCTCTG GAAGAAGGGC
GACGGCATGT TGATCGACGG CATCGGCCCG GACGGCGTCT CCGCCCGCGT GCTCGACCTC
ACCCGCGGCG TCGTCAAGCT GCAGACCGGC TATCTCTACC ACTACGCGTT CGCGATGCTG
ATCGGCGTCG CCGGTCTGAT CACCTGGTTC ATGCTCGGCG GGGGAGGCCG GTAA
|
|---|
| Protein sequence | MIEAIVFLPL IGALIAAVIA LAGAHARHPS GDTVEHTDHG HGHGADAHGL DAHAHGDTAH
EAGPDDRGHH HGPVEPIAMG SRTAEVITTA LLLVSAALSW VTLVDVGFMH HDARVALFPW
INSGDLQVAW SLRVDTLTAV MLVVVTTVSS LVHLYSIGYM HEDPHRPRFF GYLSLFTFAM
LMLVTADNLV QMFFGWEGVG LASYLLIGFW YQRPSANAAA IKAFVVNRVG DFGFYLGIFS
VFMLVGSTDF ETIFAAAPGL TGKTINFFGW HADALTLICL LLFMGAMGKS AQFLLHTWLP
DAMEGPTPVS ALIHAATMVT AGVFMVARLS PLFELAPNAQ AFVMLIGGTT ALFAATVGLV
QNDIKRIVAY STCSQLGYMF VAMGAGAYSV GMFHLFTHAF FKALLFLGAG SVIHAMHHEQ
DIRHMGGLKN RIPFTYIVMV IGTLALTGFP LTAGYFSKDA IIEAAYVSKN PMAFYGFVMT
VVAALLTSFY SWRLIFKTFH GEPHDQKHYE AAHESPLTMT IPLFVLAVGA LAAGYPFKEL
FAGHGIEEFF RTSLKMHPGI IEEMHHIPAS IALLPTVMMV VGFLVSWLFY IRRPYLPVEL
AAQHPLLYKF LLNKWYFDEL YEVIFVRPAK WIGRQLWKKG DGMLIDGIGP DGVSARVLDL
TRGVVKLQTG YLYHYAFAML IGVAGLITWF MLGGGGR
|
|---|
| |