| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2622 |
|---|
| Symbol | |
|---|
| ID | 4023119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2936792 |
|---|
| End bp | 2940310 |
|---|
| Gene Length | 3519 bp |
|---|
| Protein Length | 1172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962820 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_569752 |
|---|
| Protein GI | 91977093 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.153021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000463296 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGC CGCATCGATC GCCCGCGGAA CTGCTGACGC CCGGCAAGGC GCTGACCTTC
GCCAATGTCG CCGAGGGCGC CGAGGGGCTG ATCATCTCCG ATCTCGCGCG CGCAGTGGCG
GCGCGGCCGA AGCCGCCGGC GGTCAGCCTC GCGGTGATCT GCCGCGACGG ACCGCGGATG
CAACAGCTCG CGCGCAGCCT CGAATTCTTC GCCCCCGACG TCGCGGTGAT GCAGTTTCCG
GCGTGGGATT GCCAGCCCTA TGACCGCGTC TCGCCGCATT CCGGCATTCT CGCGCAGCGC
GTCACCGCGC TGGCGCGGTT GTCGCGTCTT GCCGGTAGCG ACAAGCCGCT GATCGTGCTG
ACCACCGTCA ACGCGGCGGT GCAGCGGGTG CCGATGCGCG AGGTGATCGC CGGGCAGGCG
CTGTCGGTCG CACCCGGCAA CGTCGTGCCG ATGGATTCGA TCGTCGCCTG GCTCGAACAT
AACGGCTATA GCCGCGCCTC GACCGTGCGC GAGCCCGGCG AATATGCGGT GCGCGGCGGC
ATCCTCGATC TGTTTCCGGC CGGGCTCGAT CAGCCGGTGC GGTTCGACTT CTTCGGCGAC
CAGCTCGAAT CGATCCGCAC CTTCGACGCC GAGACCCAGC GCACGCTGCA CGCCATGCGC
GGCCTCGATC TCGTGCCGGT GTCGGAATTC CAGCTGATCT CCGAGACCAT TCGCCGCTTC
CGGATGGGCT ATGTCGCCGC CTTCGGCGCC CCGGATCGCG ATGACCAGCT CTACAGCGCC
GTCAGCGAGG GGCGTCGCCA TCCCGGCATG GAGCACTGGC TGCCGCTGTT CCAAGAGCGG
ATGGACACGC TGTTCGACTA TCTTCCCGGC GCGCCGGTGG CGATCGAGCC GCAAAGCGAG
GATGCGGCAC GCGAGCGGTT CAAGCAGATC ACCGACTATT ACGAGGCGCG GCGCGAGGCG
ATGGACCAGC CTGGTTCCGG CGCGATCTAC AAGCCGTTGC CGCCGGATCA GCTCTATCTC
ACCGACAGCG AATGGACCGC GCGGCTGGAA GGCGCGTCGC TGGCGCGGCT GACGCCGTTC
GCGGTGCCCG ACGATGGCGG TTCGGTGATC GACGCCGGCG CGCGGGCCGG GCGCAATTTC
GCGCCGGAGC GCGCCGACAC CGCCGTGAAC GTGTTCGAGA CGCTGGTCGC GCATGTGCAG
GCGCTGCAGG CGACGCGCAA GAAAGTGGTG ATCGCGCTGT GGAGCGAAGG CTCGCGCGAC
CGCATGGCGA GCATGTTGAA GGACCACAAG CTCGTCCATC TCACCAGCGT CAATTCCTGG
CGCACCGTGC AGGCGACGCC GCGCAATGAG GCGATGCTGG CGGTGGTCGG CCTCGAATCC
GGCTTCGAAA CCGACGCATT CGCGGTGATC ACCGAACAGG ACATTCTCGG TGATCGCCTG
GTGCGGCAAC GCAAGTCGAG CAAGAAGCTC GACAACTTCA TCTCGGAAGT CACAAGTCTC
GCCAGCGGCG ACATCGTCGT CCACGTCGAA CACGGCATCG GCCGCTTCAT CGGGTTGCAG
ACACTCGAAG TCGGGGGCGC GCCGCACGAC TGCGTCGAGC TGCACTACGC CAACGACACC
AAACTGTTTC TGCCGGTCGA GAATATCGAG CTGTTGTCGC GCTACGGCTC CGACGGCACG
AATGTCGAAC TCGACAAGCT CGGCGGCTCG GGCTGGCAGG CGCGCAAGGC CAAGCTGAAG
AACCGCATCC GCCAGATCGC TGGCGAACTG ATCAAGGTGG CGGCCGAGCG GCACCTGCGC
GAGGCGCCGA AGCTGCAGGT CGAGCCGCAT CTTTACGACG AGTTCTGCGC GCGCTTCCCG
TATGACGAGA CCGAGGACCA ACTCGCGGCG ATCAACGCTG CGCTCGGCGA TCTCGGGCGC
GGTATGCCGA TGGACCGGCT GGTGTGCGGC GACGTCGGTT TCGGCAAGAC CGAGGTCGCT
TTGCGCGCTG CCTTCGCGGT GGCGCTCGAC GGCAAGCAGG TCGCCGTCGT GGTGCCGACC
ACGCTGCTGG CGCGGCAGCA CGCCAAGACT TTCGCCGATC GTTTCCGCGG CTTCCCCGTC
AACGTCGGCC AAGCGTCGCG GCTGGTGTCG CCGAAGGAAC TGACGCAGGT CAAGAAGGGC
ATCGCCGATG GGCAGATCGA CATCGTGGTC GGCACTCACG CGCTGCTCGG CAAGGCGATC
AAGTTCAAGG ATCTCGGCCT GGTGGTGGTC GACGAGGAAC AGCATTTCGG CGTCACCCAC
AAGGAGCGGC TGAAACAGCT TCGCGCCGAG GTTCATGTGC TGACGCTGAG TGCGACGCCG
ATTCCGCGCA CGCTGCAGTT GGCGATGACT GGCGTGCGCG ACCTGTCGAT CATCGCGTCG
CCGCCGGTCG ATCGGCTTGC GGTCCGCACC TTTGTCGCGC CGCATGATCC ATTGATGATC
CGCGAGGCGC TGTTGCGCGA GCGCTATCGC GGCGGCCAGG CGTTCTATGT CTGCCCTCGG
ATCGACGACC TCGCCGAGGT GAAGGACTTC CTCGACAAGC ACGTGCCGGA GATGAAAGTC
GCGGTCGCCC ACGGCCAGAT GCCGCCGACG GTGATCGAGG ACATCATGTC GGCGTTCTAC
GACGGCAAAT ACGACATCCT GCTGTCGACC ACGATCGTCG AATCCGGCCT CGACATTCCG
ACCGCAAACA CGCTGATCAT CCACCGCGCC GACATGTTCG GTCTGGCTCA GCTGTATCAG
CTTCGGGGCC GCGTCGGTCG CTCCAAGCTG CGCGCCTATG CGCTGTTCAC GCTGCCGTCG
CAGCACAAGA TCACGCCGCA GGCGGAGCGG CGGCTGAAGG TGCTGCAATC GCTGGAGACG
CTCGGCGCAG GCTTCCAGCT CGCCTCACAC GATCTCGACA TCCGCGGCGC CGGCAATCTG
CTCGGCGAGG AACAGTCCGG CCACATAAAG GAAGTCGGCT TCGAGCTGTA TCAATCGATG
CTCGAGGAGG CGATCACCAA CCTCAAGGCC GGCGTCTCTG AGCCGGTCGC CGACCGCTGG
TCGCCGCAGA TCACCATCGG CATGCCGGTG TTGATCCCGG AGGAATTCGT CAACGATCTG
TCGGTGCGGC TGTCGCTGTA TCGCCGGCTC GCCGATCTCG ACACCGACGA GGAGATCGAG
AACTTCGCCG CCGAGCTGCG CGATCGGTTC GGGCCGCTGC CGGACGAGGT GCGCTATCTG
TTCAAGGTCG CGGCCATCAA GGCGTATTGC CGGCGCGCCA ATGTCGAGAA GGTCGATGCC
GGGCCGAAGG GCGTCGTCAT CACCTTCCGC GACAATTCCT TCGCGCAGCC GGATCGTCTC
GTCACCTTCA TCCGCCGCCA TGGCGACGCC GCCAAGGTCC GGCCGGACAT GAAGGTCGTG
TTCTTCCAGG TGTGGAAGAC TCCGGAGGAG CGGCTGGCAG GCACCACCGA CATTATGAAG
CAGCTCGCCG AGCTCGCCGA AACCCGCAAG GCGGCCTGA
|
|---|
| Protein sequence | MKTPHRSPAE LLTPGKALTF ANVAEGAEGL IISDLARAVA ARPKPPAVSL AVICRDGPRM
QQLARSLEFF APDVAVMQFP AWDCQPYDRV SPHSGILAQR VTALARLSRL AGSDKPLIVL
TTVNAAVQRV PMREVIAGQA LSVAPGNVVP MDSIVAWLEH NGYSRASTVR EPGEYAVRGG
ILDLFPAGLD QPVRFDFFGD QLESIRTFDA ETQRTLHAMR GLDLVPVSEF QLISETIRRF
RMGYVAAFGA PDRDDQLYSA VSEGRRHPGM EHWLPLFQER MDTLFDYLPG APVAIEPQSE
DAARERFKQI TDYYEARREA MDQPGSGAIY KPLPPDQLYL TDSEWTARLE GASLARLTPF
AVPDDGGSVI DAGARAGRNF APERADTAVN VFETLVAHVQ ALQATRKKVV IALWSEGSRD
RMASMLKDHK LVHLTSVNSW RTVQATPRNE AMLAVVGLES GFETDAFAVI TEQDILGDRL
VRQRKSSKKL DNFISEVTSL ASGDIVVHVE HGIGRFIGLQ TLEVGGAPHD CVELHYANDT
KLFLPVENIE LLSRYGSDGT NVELDKLGGS GWQARKAKLK NRIRQIAGEL IKVAAERHLR
EAPKLQVEPH LYDEFCARFP YDETEDQLAA INAALGDLGR GMPMDRLVCG DVGFGKTEVA
LRAAFAVALD GKQVAVVVPT TLLARQHAKT FADRFRGFPV NVGQASRLVS PKELTQVKKG
IADGQIDIVV GTHALLGKAI KFKDLGLVVV DEEQHFGVTH KERLKQLRAE VHVLTLSATP
IPRTLQLAMT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVCPR
IDDLAEVKDF LDKHVPEMKV AVAHGQMPPT VIEDIMSAFY DGKYDILLST TIVESGLDIP
TANTLIIHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPS QHKITPQAER RLKVLQSLET
LGAGFQLASH DLDIRGAGNL LGEEQSGHIK EVGFELYQSM LEEAITNLKA GVSEPVADRW
SPQITIGMPV LIPEEFVNDL SVRLSLYRRL ADLDTDEEIE NFAAELRDRF GPLPDEVRYL
FKVAAIKAYC RRANVEKVDA GPKGVVITFR DNSFAQPDRL VTFIRRHGDA AKVRPDMKVV
FFQVWKTPEE RLAGTTDIMK QLAELAETRK AA
|
|---|
| |