| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2593 |
|---|
| Symbol | |
|---|
| ID | 4023089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2907526 |
|---|
| End bp | 2908383 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962790 |
|---|
| Product | D-amino acid aminotransferase |
|---|
| Protein accession | YP_569723 |
|---|
| Protein GI | 91977064 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0296387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCA TCGCCTATGT GAACGGCCGT TACCAGGACA TGCGCGACGC CAGCGTGAAC
ATCGAAGACC GCGGCTATCA ATTCGCCGAC GGGGTTTACG AAGTCTGCGA GGTGCGGACC
GGCAAGCTCG TCGACATGCC GCGGCACCTG ACACGGTTGC AGCGATCACT GAGCGAATTG
CGGATCGCGC TGCCGATGCC GCTGTCGTCG CTGGCGGTGA TCCTGCACGA GGTGGTGCGG
CGCAATCGTG TTCGTTTCGG CATCGTCTAT CTGCAGATCA GTCGTGGCGT GGCCCGACGC
GATCATGGAT TTCCGCTGAA GCCGGTGAGG CCGAGCGTCG TGGTGACCGC GCGGACGATC
GACCCGGCCA AGGGCGCCGC CAATGCGGCG CGCGGTATCA AGGTGATCAC CGTTCCGGAG
AATCGCTGGC CGCGGGTCGA CATCAAATCA ACGGCGCTGC TGCCGAACGT GCTGGCGAAA
CAGGCGGCGC GCGAGGCCGG CGCCTATGAG GCGTGGTACG TCGACGGCGA CGGCTTCGTG
ACCGAAGGCT CGTCGAGCAA CGCCTGGATC GTGACCAAAG AGGGGCGTGT GGTGACGCGC
CCGGACAGCT CCGGCATTTT GTCCGGGGTC ACCCGAGGCG TTCTGATCGA AGCGCTGGAG
GCGCTGCAGA TCCGCTTCGA GGAACGTCCG TTCACGCCGG CCGAGGCGGT TGACGCAGCG
GAAGCGTTCG TCACTGCGTC GAGCATGATC GTGATGCCGG TGGTCACGAT CGATGGTCAT
GCGATCGGAA GTGGCAAGCC GGGCCCGGTG GCTCGCCGCC TGCGCGAGCA ATTCCATCGC
TTTTCGGCCT TTTCCTGA
|
|---|
| Protein sequence | MSRIAYVNGR YQDMRDASVN IEDRGYQFAD GVYEVCEVRT GKLVDMPRHL TRLQRSLSEL
RIALPMPLSS LAVILHEVVR RNRVRFGIVY LQISRGVARR DHGFPLKPVR PSVVVTARTI
DPAKGAANAA RGIKVITVPE NRWPRVDIKS TALLPNVLAK QAAREAGAYE AWYVDGDGFV
TEGSSSNAWI VTKEGRVVTR PDSSGILSGV TRGVLIEALE ALQIRFEERP FTPAEAVDAA
EAFVTASSMI VMPVVTIDGH AIGSGKPGPV ARRLREQFHR FSAFS
|
|---|
| |