Gene RPD_1924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1924 
Symbol 
ID4022406 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2162066 
End bp2162857 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content63% 
IMG OID637962117 
Producthypothetical protein 
Protein accessionYP_569060 
Protein GI91976401 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.139586 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.581672 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACCTTT TGACCCTCAG GCGAAGCGCC CTGGCTTTCA CTTTCGCTTC TCTGCTGTTC 
TCCCCCGCCG TCGCCGAACC CGCGAAGCCC AAGCCCGATT TCGCGGTCAA GACCAAGGCG
ATCGACGCCA GCGTCACGCT CGACGCGACG ATCAAGGCCG ATCCGAAACT CGCCGAGAAT
TGCCTCGCCG AAGGCAAGAA ATGGATCGCC GAGAACCGCG CCGAGGCCGA GCAGGAATTC
AAGAGCGATC CGGAACTGTT CCGCAACGGC GCGTGGACCT ATGAGCGCAG CTACGCGACC
TCGTCTCTGG TCGCGAACCG CTATCTCAGC ATCTTGCGCA CCGACTACAG CTACACCGGC
GGCGCACATC CCAACACCGA CACCAACACC ATTCTATGGG ACAAGACCCA GGCCAAACGT
ATCAGCATCC GGCCGTTCTT CACCGAGACC GCCGATGGCG GCCCGACGAT GAAGGCGATG
GTGGCGGGCG TGCTCGCCTC ATTGAAGGCC GAGAAAAAAG CGCGCGACAT CGACGACAGC
GACACCGACT ACGTCAAGAG CATCGAGCCG AGCCTCGTGA AGATCGGCGC AGTGACTCTC
ACGCCGTCGA CCGAAGCCGG CAAGAGCGCC GGCCTCACCT TCCACTACCC GCCCTACGCG
GTCGGCGCCT ATGCCGAAGG CGGATACACC GCCTTCGTGC CGTGGCAGAC ATTGAAGCCG
TATCTGTCTG CGGAAGGCTC CACGATCTTC GCCGGCGAGC GGCCGAAGAG CGACGAGAAC
GGCGGGCAGT AG
 
Protein sequence
MNLLTLRRSA LAFTFASLLF SPAVAEPAKP KPDFAVKTKA IDASVTLDAT IKADPKLAEN 
CLAEGKKWIA ENRAEAEQEF KSDPELFRNG AWTYERSYAT SSLVANRYLS ILRTDYSYTG
GAHPNTDTNT ILWDKTQAKR ISIRPFFTET ADGGPTMKAM VAGVLASLKA EKKARDIDDS
DTDYVKSIEP SLVKIGAVTL TPSTEAGKSA GLTFHYPPYA VGAYAEGGYT AFVPWQTLKP
YLSAEGSTIF AGERPKSDEN GGQ