Gene RPD_1688 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1688 
Symbol 
ID4022168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1902486 
End bp1903253 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content66% 
IMG OID637961882 
Producthypothetical protein 
Protein accessionYP_568825 
Protein GI91976166 
COG category[S] Function unknown 
COG ID[COG3334] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0687483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.086166 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCAT TTCGCGACGT CCGCATCCTT CCGGTCGTGC TGGTCGCGAT CCTCGGCCTT 
GTCGTGCTCA AGGTCGCCGG GTTGATGCTC GATGGCGGCT ATATGTTCGA TTACGATCCC
AAGGCCACCA AGCCGTCTTG GGCGCAGGCC AACCTGAATT TTCCCGGCGG CAACGCCAAG
ACCGGAGATT CCGACATCAC CGGCTCGGTG CCGGCGGCGC CGAAGAAGGA AGAGCCGAAG
CCGGTGGTCG CGCCGCCGGA GGAGGCCAAG CCGGCCGAGA CCGAGCCGCC GCAGGCGATA
TCTCCCGCCG AGCGCGCCAT TCTGGAGCGG CTGCAGGCCC GGCGGCAGGA ACTGGATGCG
CGCGCGCGCG AGGTCGAAAT CCGCGAGAGC CTGCTGAAGG CGGCGGAGAA GCGGATCGAG
TCGCGAGTCG AGCAGATAAA GGCCAGCGAG GGCGAAATCG GAAAGGCGAC CGAGCAGAAG
ACCGAAGCCG ACGCCGCGCG CTTCAAGGGC ATCATCACGA TGTACGAATC GATGAAGCCG
AAGGACGCGG CGAAGATCTT CGATCGGCTC GAGATGCCGG TTCTGATCGA AATCGCTTCG
CAGATCGCGC CGCGCAAGAT GTCCGACATT CTCGGTCTGA TGACGCCCGA AGCCGCCGAG
AAGCTGACGG TCGAGATGGC GCGCCGGGCC AGCGGCAGGT CGGCCGCCAC GGCGTCGGCC
GCTGCGCTAC CGAAGATCGA GGGCCGGCCG CTTCCGCCGC GGCAGTAA
 
Protein sequence
MNAFRDVRIL PVVLVAILGL VVLKVAGLML DGGYMFDYDP KATKPSWAQA NLNFPGGNAK 
TGDSDITGSV PAAPKKEEPK PVVAPPEEAK PAETEPPQAI SPAERAILER LQARRQELDA
RAREVEIRES LLKAAEKRIE SRVEQIKASE GEIGKATEQK TEADAARFKG IITMYESMKP
KDAAKIFDRL EMPVLIEIAS QIAPRKMSDI LGLMTPEAAE KLTVEMARRA SGRSAATASA
AALPKIEGRP LPPRQ