| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1616 |
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| Symbol | |
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| ID | 4022096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1810567 |
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| End bp | 1812483 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637961811 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_568754 |
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| Protein GI | 91976095 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.688327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAATGC GTTTTTTTTC AAAGATGCGA TCGCGAAACT ACCTCATCAT TTTGCACGAT
GTGATTGCGA CGGCGTGCGC GATTCTGACG AGTTTCTATC TTCGCTTCGA CGGTGAAGAT
CTGTCTGCTC GCCTCCCGCT ACTTTGGACG TTGATGCCGG GCTTTTTGCT GCTGAGTGTC
GTCGTTTTCT ATGTCTTCAG GCTAACGACG TCGAAATGGC GGTTTGTTTC GCTTCCCGAC
GGCATCAATA TTCTTCGCGC AGCAACCGTC CTCACCGTCG TTCTCATCAT TACCGATTAC
ATTTTCCTGG CGCCCGACGC TTACGGAACC TTCTTCCTGG GTCGGATTAC CATCGTCCTG
TATTGGTTCC TCGAAGTCGC CTTTCTGAGT GCGCCGCGAT TTGCTTACCG TTACTTCCGC
TACACACGAA CACGCAATCA GGCTAAGGCG ATCAATGCCG CTCCCACGGT TCTGATCGGC
CGCGCAGCCG ATGCCGAGAT TCTGATTCGG GGAATCGAGA GTGGCGCCGT CAAGCAGCTT
TGGCCGGTGG GGATTTTATC GCCTTCGGCC GCTGACCGCG GCCAACTCGT TCGAAATATT
CCTGTCCTCG GAGGGATTGG CGACCTTCAG GATGTCGTCG CGGACTACGC GAGACGTGGA
AAGCCGATCG AGCGCGTGGT AATGACGCCG TCCGCCTTCG AGCCTGACGC CCATGCGGAA
TCGATTTTGG TCCGCGCACG AAAACTCGGA CTGCTGGTCA GCCGGTTGCC GTCACTTGAA
GAAAGCCGCG ACGTGCCCCG GCTGGCGGCC GTTGCGGTCG AAGATTTGCT GCTCAGGCCG
ACTGAGAAGA TCGACTACGG CCGTCTGGAG GCCCTGGTGA AGGGCAAGGC GGTGATCGTG
ACCGGAGGCG GCGGCTCGAT TGGCGCTGAA ATCTGCGCCC GAGTCGCAAC CTTCGGCGCC
GCAAGATTGC TGGTGATCGA GAACTCCGAA CCGGCGCTCT ACGCGGTCGT CGAAACGCTC
TCGGCGACTC TGGTTCAGAT CCGCGTCGAA GGTCGCATCG CGGATATTCG GGATCGCGAG
CGTATTCTTG GCTTGATGAA CGAGTTCAAG CCGGATCTGG TGTTCCATGC CGCCGCGCTG
AAGCACGTTC CAATTCTGGA GCGCGACTGG AGCGAGGCCG TGAAGACTAA CATTTTCGGA
TCCATCAACG TTGCAGACGC GGCCTTGGCC GCGGGTGCGG AAGCGATGGT GATGATCTCG
ACCGACAAGG CTATCGAGCC GGTGTCGATG CTGGGGCTCA CCAAGCGTTT CGCGGAGATG
TATTGTCAGG CGCTCGATCG CGAACTCTCG GACAAGGGCG CAGGAAAGAC GCCGATGCGG
CTGATTTCCG TGCGATTTGG TAATGTGCTG GCTTCGAATG GCTCCGTCGT TCCGAAGTTC
AAGGCTCAGA TTGAAGCGGG CGGCCCTGTG ACTGTCACCC ATCCGGATAT GGTGCGGTAC
TTCATGACGA TCCGTGAGGC ATGTGATCTG GTCATCACGG CGGCCACGCA TGCTCTGACG
TCTGCATGTT CCGACGTGTC GGTTTACGTG CTCAACATGG GGCAGCCGGT ACGGATCGTC
GAACTGGCCG AGCGCATGAT CAAATTGTCG GGCCTTGAAC CCGGGCACGA TATCGAGATC
GTCTATACGG GCGTGCGCCC AGGTGAGCGC CTGAATGAAA TCCTGTTCGC GCATCAGGAG
CCGACGATTG AAATCGGGAT CGCGGGGGTG ATGGCGGCGA AACCCAACGA GCCAAAAATG
CAGACATTGA GAGACTGGAT CATCTCGCTC GATGAGGCCA TCGCAACCAA TGACCATGCA
AGAGTTCAGC TGGTGCTGAA AGATGCGGTT CCGGAGTTCG GCGTCAGCAT GGCGTGA
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| Protein sequence | MVMRFFSKMR SRNYLIILHD VIATACAILT SFYLRFDGED LSARLPLLWT LMPGFLLLSV
VVFYVFRLTT SKWRFVSLPD GINILRAATV LTVVLIITDY IFLAPDAYGT FFLGRITIVL
YWFLEVAFLS APRFAYRYFR YTRTRNQAKA INAAPTVLIG RAADAEILIR GIESGAVKQL
WPVGILSPSA ADRGQLVRNI PVLGGIGDLQ DVVADYARRG KPIERVVMTP SAFEPDAHAE
SILVRARKLG LLVSRLPSLE ESRDVPRLAA VAVEDLLLRP TEKIDYGRLE ALVKGKAVIV
TGGGGSIGAE ICARVATFGA ARLLVIENSE PALYAVVETL SATLVQIRVE GRIADIRDRE
RILGLMNEFK PDLVFHAAAL KHVPILERDW SEAVKTNIFG SINVADAALA AGAEAMVMIS
TDKAIEPVSM LGLTKRFAEM YCQALDRELS DKGAGKTPMR LISVRFGNVL ASNGSVVPKF
KAQIEAGGPV TVTHPDMVRY FMTIREACDL VITAATHALT SACSDVSVYV LNMGQPVRIV
ELAERMIKLS GLEPGHDIEI VYTGVRPGER LNEILFAHQE PTIEIGIAGV MAAKPNEPKM
QTLRDWIISL DEAIATNDHA RVQLVLKDAV PEFGVSMA
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