| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1425 |
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| Symbol | |
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| ID | 4021902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1589105 |
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| End bp | 1589848 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637961617 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_568563 |
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| Protein GI | 91975904 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA CGCCCAGCCG ACCTTCCGAA TCGCACCGCT CCGGCCGCAA AGTTGCGGCT
GGCCCCGTCG CCGAGGAACT GCCGCGGTCC GCTGCAGGAG CAAGCCAGGC GGCCCCGGAC
GAGGCGCCGG CGCGCGCCGG CGCTGGCGCC GGCAGGCTGC CTTCGGACCC CCAGGCCAAA
ATCCGGCGGC TGAAGGCCCA GCTCGCCGCT GCGTTGGCGC AGATCGAAGA GCTGCGCGCC
TCCGCCGAGA CCGACTTCCT GCTCGGCATC TCCAACCGCC GCGGCTTCGA GCGCGAACTC
AACCGCGCGC TCGCCTACAT CAAGCGCTAC GGCGCGGCCG GCGCGCTGAT CCTGCTCGAC
GTCGACCGGT TGAAGCCGGT TAACGACACT TTCGGCCATG CCGCCGGCGA TGTCGTGCTG
AAGTCGGTGG TCGAGGCGTT GCTCAGCCAC GTCCGCGCCT CCGACCTGAT CGGCCGGCTC
GGCGGCGACG AGTTCGCGTT GCTGCTGTGG AATCTCTCGG AGGCCGACGC CCACATGAAG
GCCGCCGCGC TGGAGCAGAC GGTCGACCAG CTCGTGATTC GTTTCGGGAC GCACACCGTC
GCTGCCGGAG TTTCGGCCGG CGTCGCGATG CTGACGGCGG ATATGGATGC GGCGGGGGCG
CTGGCCTGCG CCGACCGGGC GATGTACGCC CGCAAGGCCG AGCGCCGCGC GGCCGAGGGC
AAGCCGGACC CGGTCAGGCG ATGA
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| Protein sequence | MKKTPSRPSE SHRSGRKVAA GPVAEELPRS AAGASQAAPD EAPARAGAGA GRLPSDPQAK
IRRLKAQLAA ALAQIEELRA SAETDFLLGI SNRRGFEREL NRALAYIKRY GAAGALILLD
VDRLKPVNDT FGHAAGDVVL KSVVEALLSH VRASDLIGRL GGDEFALLLW NLSEADAHMK
AAALEQTVDQ LVIRFGTHTV AAGVSAGVAM LTADMDAAGA LACADRAMYA RKAERRAAEG
KPDPVRR
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