| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0446 |
|---|
| Symbol | |
|---|
| ID | 4020912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 515319 |
|---|
| End bp | 515588 |
|---|
| Gene Length | 270 bp |
|---|
| Protein Length | 89 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637960631 |
|---|
| Product | transcriptional regulator AbrB |
|---|
| Protein accession | YP_567585 |
|---|
| Protein GI | 91974926 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01439] looped-hinge helix DNA binding domain, AbrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.627341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.288224 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCGC CTCAGGAACA GGCGGAGGTC GACATGGCGA GCAGGATCAC GAGCGATGGC
CGAGTGAGGA TTCCGAAGGA CATTCTCGAG ACCCTGGACG TTGGCCCGGG GGGAGAGGTC
GACTTCAAGC GCGGGGCGGA TGGGGCCGTG GTCCTGGAAA AGGTTAGTCA GCCGAGCCGC
AGACAAATCG ACTGGGAGAA GGTGATCGGC AGTGCCGGAC CAGGGCTTTC GACCGACGAG
GTGATGAAGC TACTGCGAGG CGACGATTAG
|
|---|
| Protein sequence | MRAPQEQAEV DMASRITSDG RVRIPKDILE TLDVGPGGEV DFKRGADGAV VLEKVSQPSR
RQIDWEKVIG SAGPGLSTDE VMKLLRGDD
|
|---|
| |