Gene RPD_0405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0405 
Symbol 
ID4020871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp470489 
End bp472027 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content71% 
IMG OID637960590 
ProductMg chelatase-related protein 
Protein accessionYP_567544 
Protein GI91974885 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0606] Predicted ATPase with chaperone activity 
TIGRFAM ID[TIGR00368] Mg chelatase-related protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCAGC ACGTGTCCAC CGTGGCTTTC GAAGGCATCG AAGCGCGCGC TGTCGATGTC 
CAGGTCCAGG TGTCGCCGGG CCTGCCGGCC TTTGCCGTCG TCGGCCTCGC CGACAAGGCG
GTGTCGGAAG CACGCGAGCG GGTCCGTTCG GCGCTGATCG CCTCGGGATT GGCGCTGCCG
GCGCGGCGCA TCACCGTCAA CCTCGCGCCC GCCGATCTGC CCAAGGAAGG CAGTCACTAC
GATCTGCCGA TCGCGCTCGG GCTGATGGCG GCGATCGGGG CGATCCCCGC CGATGCGCTA
GCCGGCTTCA CCGTGCTCGG CGAACTCGGC CTCGACGGAT CGATCGCGCC GGTGGCCGGC
GTGCTGCCGG CCGCGATCGC AGCCAACGCC CGCGACGAAG GCCTGATCTG CCCGGCCGCC
TGCGGCTCGG AGGCGGCCTG GGCCAGTCCC GACATCCAGA TCATCGCGGC GCGCTCGCTG
ATCCAGATCG CCAATCATTT CAAAGGGACG CAACTTCTGA GTCGGCCGCA GCCGCGGGTC
CATGAGACCG AGAGTTCGAC GCTCGACCTG CGCGACATCA AGGGCCAGGA GAGCGCCAAG
CGCGCGTTGG AAATCGCCGC CGCGGGCGGC CATCATCTGT TGATGGTCGG CTCGCCCGGC
GCCGGCAAGT CGATGCTGGC GGCGCGGCTG CCGTCGATCC TGCCGCCCTT GTCGCCGGGC
GAACTGCTGG AAGTGTCGAT GATCGCCTCT GTCGCGGGGG AGATCCGCGA CGGCGCGCTG
ACCGCGCGGC GGCCGTTCCG CGCGCCGCAT CACTCCGCCA GTATGGCGGC GCTGACCGGC
GGCGGCGTCA AGGCGCGACC GGGCGAGATT TCGCTCGCGC ATCAAGGCGT GCTGTTTCTC
GACGAGCTGC CGGAGTTCGA TCCGCGCGTG CTGGATTCGC TGCGCCAGCC GCTCGAGATC
GGCGAGGTGG CGGTGTCGCG CGCCAATCAC CGCGTCACCT ATCCGGCCCG CGTGATGCTG
GTCGCGGCGA TGAATCCGTG CCGCTGCGGC CGGGCTTACG AGCCGGGCTA CGCCTGCAAA
CGCGGCCAAG TCGATCGCTG CAGCGCGGAC TATCAATCGC GGATTTCGGG GCCGCTGATG
GACCGGATCG ATTTGCGAAT CGAGGTGCCC GCGGTGACCG CCGCCGACCT GATCCTGCCG
CCGGCGGCGG AAGGGTCAGC CGAGGTCGCG GCCCGCGTCG CCGCCGCGCG CGATCTCCAG
CGCGAGCGCT ACGCCGCGAT CGGCCTGCCG CAGATCCGCA CCAATGCGGA GGCGCCGGCT
TCAACGCTGG AGGCCACCGC GCAGCCGGAC TCCGCCGGGC TCAAATTGCT GCGCGACGCT
GCCGAAACCA TGCGGCTGTC GGCGCGCGGC TATCACCGCG TCCTCCGCGT CGCGCGCACC
CTCGCCGATC TCGACGGCGC CGAGATCATC GGCCGGCTGC ATCTCGCGGA AGCGCTGTCC
TATCGCGCGC TCGGCGAGGA CATCAAGCGC GCCGCGTAG
 
Protein sequence
MVQHVSTVAF EGIEARAVDV QVQVSPGLPA FAVVGLADKA VSEARERVRS ALIASGLALP 
ARRITVNLAP ADLPKEGSHY DLPIALGLMA AIGAIPADAL AGFTVLGELG LDGSIAPVAG
VLPAAIAANA RDEGLICPAA CGSEAAWASP DIQIIAARSL IQIANHFKGT QLLSRPQPRV
HETESSTLDL RDIKGQESAK RALEIAAAGG HHLLMVGSPG AGKSMLAARL PSILPPLSPG
ELLEVSMIAS VAGEIRDGAL TARRPFRAPH HSASMAALTG GGVKARPGEI SLAHQGVLFL
DELPEFDPRV LDSLRQPLEI GEVAVSRANH RVTYPARVML VAAMNPCRCG RAYEPGYACK
RGQVDRCSAD YQSRISGPLM DRIDLRIEVP AVTAADLILP PAAEGSAEVA ARVAAARDLQ
RERYAAIGLP QIRTNAEAPA STLEATAQPD SAGLKLLRDA AETMRLSARG YHRVLRVART
LADLDGAEII GRLHLAEALS YRALGEDIKR AA