Gene RPC_4888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4888 
Symbol 
ID3973710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5455815 
End bp5456810 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content71% 
IMG OID637928000 
Productglycosyl transferase family protein 
Protein accessionYP_534729 
Protein GI90426359 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0859] ADP-heptose:LPS heptosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCCA CCGCCGTCAT CCAGACCAAG CAAGGCATCG GCGACGTGAT GTGGCATCTG 
CCGTTCATCC GGGCGATCGC CGCCGCCACG CCGGAGCGCG CGGTGACCTT CCTGACGCTG
CCCTCCAGCT TCGCCCGCGA TCTGCTCCGC GGCGAAGCCT GCGTCGCCGA GACGCTCTAT
TACGAGAACC GCGGCTCCGA ATGGGCGCGC GGTCTGCACC TCGCGCGATT GATCGGCACC
TTGCGGGCGA GGCGCTTCAC CACGTTGTGG ATCCTCGACC GCTCGGTGCG TCCGGCGATC
GCGGCCTTGG CCGCCGGCAT CCCGAACCGG ATCGGGCTCG GCTTCGGCCA GCAGCGACTG
TTCATCACCA ACCCGGGCAT CGACCCGCGC TACCGGCCCG AACACCCGAT CGAATGGCTG
AAGGCGTTGA TGGCGGCGAT GCAGCTGCCG CTGCCCGACA CCGAGCCGAA CCTGACGCTG
CCGCCGGCGC TGCGCGCCGA GCTGTTGCGG CGTTATCAGG ACCGGCCGCG GCCGTGGATC
GTGCTCGGCA TCGGCGCCTC GGCGCCGCAG CGCGATTGGA GCGACGCGCA ATGGAGCGCC
TTTTTGGACG AATTGCGCCG GCGCTCGACT GGCACCGCAT TTCTGATCGG CGGTCCCGGC
AACGCCGCGC GGGCCGCCGC ACTGATCGCC GCCGGGCGCG GCGCTGAGGT CAACGCCTGC
ACGCTGTCGA TCGCCGAGTC GGCGGCGCTG ATCGGCGGCG CCGATCTCTA TCTCGGTCCG
GATTCCGGAC CGCTGAACGT CGCGGCCGCG GTCGGCACCC CGGCGTTCGG GCTTTTCGCG
GTCAATCCGG TGCTGGACTA TTCGCGCTTC ATCCATCCGA TCCTGCCCGA CGATGGCCGG
CGCTCGCCGG ACGGCATGGC GCGCACCTCG CCGGGGCGCG TGCTCGACGC CATCGCGCCG
CACCTCGCGA GCCCGACGGC GTCGGCGCCC GTCTGA
 
Protein sequence
MTSTAVIQTK QGIGDVMWHL PFIRAIAAAT PERAVTFLTL PSSFARDLLR GEACVAETLY 
YENRGSEWAR GLHLARLIGT LRARRFTTLW ILDRSVRPAI AALAAGIPNR IGLGFGQQRL
FITNPGIDPR YRPEHPIEWL KALMAAMQLP LPDTEPNLTL PPALRAELLR RYQDRPRPWI
VLGIGASAPQ RDWSDAQWSA FLDELRRRST GTAFLIGGPG NAARAAALIA AGRGAEVNAC
TLSIAESAAL IGGADLYLGP DSGPLNVAAA VGTPAFGLFA VNPVLDYSRF IHPILPDDGR
RSPDGMARTS PGRVLDAIAP HLASPTASAP V