| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4506 |
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| Symbol | |
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| ID | 3972284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5016028 |
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| End bp | 5019825 |
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| Gene Length | 3798 bp |
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| Protein Length | 1265 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927617 |
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| Product | NADH dehydrogenase (quinone) |
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| Protein accession | YP_534348 |
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| Protein GI | 90425978 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.105233 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCATA TTTCACTTCT CGGCTGGCTT GGACTGTTGC TGACTCTGGC TGGCGAGGTC
ACCGCGCTGA TGCAGATCCG CGACCTCAAG CGGATGCTGA TCGCCTCCTG CATCGCCGAA
CTCGGCTATG TTCTCATGGG GTTCGGGGTT GGAACCTTGA CCGGCGACAC CGGCGCGGTG
ATGCACCTCG GTTACCAGAT GGTGATGCGC GCGCTGCTGC TGCTGGCGGC CTGGCATCTG
ATCCGGCGCA CCGGATCGTC GAAGCTCGAC GATCTGGTCG GCAGCGTCGA ACGGTTCCCG
TTCGTGTCGC TGATGTTCGG CTTCGGCATG TTCTCGGTGA TGGGGCTGTC GCCGTTCAAG
GGCGCGTTCT CCAAATTCAT TATTCTCTAT GCCGCGATCG AAAACGGCGA CTGGCTGCTC
GCGGTCGGCG GCACCATCGC CAGCATCATC GCCGCGGTTT ACTTCATCCG CACCGTGCAG
GTGGTGTGCT TCCAGCGCCA GAGCCACGGC ATTCTGAAGG ACAAGCCGAT CTCGTTCTTC
GCCATCACGC CGCGCGACGC GCCGATGGTG GTGCTGGCGC TCGCCACCAT CGTGATGAGC
CTGTATCCCG ACCCGTTCCT GGCGATGGCG GCGACCGCGG CCGGCATGGC CGATCACTCC
GCGCTGCCGG AATTCGAGAC CGCTTGGAGC GCGCCGGTGC TGCTGCCTTA CGTCGGCGGC
TTCCTGCTGT TCGTGCTCGG CCGGTTCTCC CCCTCGCTGC GCAGCGTCGG CGCCGCGGTG
ATCGCGGCTG CGACCTTCGC GCTGGTGGCC TTCACCTTGA AGAGCGGCGA CGTCGGCGAT
TATTTCGCGC TGATCTTCGC CGGCATCGGC CTCGCCGTCA CGGTCTATTC GATCCGCTAC
ATCGCGCATT CGCACGCCAT CAACCGCTAT TTCTTCTTCC TGTTCGTGAT GATCGGCTCC
CTGATCGGCG TCGCCACAGC GAACCATCTC GGTAATTTCT ATCTGTTCTG GGAGCTGATG
ACCTGGAGCT CGTATCTCCT GGTGATCCAC GAGCAGACCG ACAAGGCGCT CAAGGCCGGG
ATGAAGTACT TCCTGATCTG CAGCTCCGGC GCTTACGTGA TGCATCTCGG CATCCTGTTG
CTGCACACCC AGCTAGGCAC CTTCGAACTC AGCGAAATCG CCGAGCGCGC GCCGCAATTG
TCGCCGGCGA TGGGCTGGCT GATCGCCGCG ACCTTCCTGG TCGGGCTGGG CGCCAAGGCC
GGGCTGTTTC CGCTGCACAG CTGGCTGCCG GATGCCCATC CGGTGGCGCC GTCGTCGATC
TCGGCGCCGA TGTCCGGGAT CCTGACCAAG GCCGGCATTC TCGGCATTGT GAAGCTGTTG
TTCGCGGTAT TCGGCGCGGC GAGCTTCGTC CACCTCGATG TGTTCGGCGG GCTGACCGCG
CCCGGCGTGG TACTGATCGT GCTGGGCAGC GTCACCTTCC TGATCGGCGA GATCCAGGCC
TATCGGCAGA CCGACATCAA GCGGCTATTG GCCTATTCGA CGTTGGCGCA GGTCGGCGAG
ATCACCATGG TGATCGGCGT CGGCACCTAT CTGGCGCTGG CCGGCGCGCT GGTCCACGTC
GCCAACCACG CCATCATGAA AACGCTGCTG TTCTTCTGCG CCGGCGCGCT GATCATGCGC
GCCAAGGGCC AGACGCTCGA CGCCTTGAAG GGCATCGGCC GCAAGATGCC GTTCACCGCG
TTCTGCATGG GCATCGGCCT TTTGGCGATC ATGAGCGTAC CGCCGTTCGG CGGCTTCGTC
GGCAAGTTCT TGATGATCTA TGCCTGCGTC GAGGCCGGCC AAATCCCGGT GGCGATCGTG
ATGCTGCTCG GCGGCGTGAT CGGCGCGATG TATTACGCCC GCATCCTGCG CGTGGTGTTC
TTCGCGCCCT ATAGCGGACC CGCAATCGCC GAGGCGCCGT TGTCGATGCG GATCGTGCTC
GGCGCGCTCG CGGCACTCTG CGTGGTCAAC GGGCTGTATC CGGACGCCGT GCTGCACTTC
GCGCTGCCGG TGGTGGATCG TCTGGCTGCG CACAGCGAGC TGGCGCGTGC GGCATTGCCG
CCGTTGACGA TGCAATGGTC GCTCGCCGCC GCGATCGCCG CGCTCGGCGC CATCGCGGTC
TATCTGCTCG GCCGCGGCCG TCCGCTGCGC GCCGGCGTGT TGTCGGTCGG CGTGATGGCG
GCGGCGTTGG CCGGCGTGCT GCTGCAGGCG GCGAGCTACG ATGCGCTGTC GTTCTGGTAT
GCCGCGGCGA TCGTGGCGAT GGCTGGCGTC AACCTGTGCT ACTCGATCGG CTACATGGCG
CATGGCCATG CGCAGAACCG GTTCTTCTTC TACTTCCTGG CGATGATCGC CGGATTGCTC
GGCGTCGCCG CCAGCGGCAA CCTGTTCTCG TTCTTCGCGT TCTGGGAGCT GATGAGCAGT
TGGACGCTGT ATCTGGTGAT CAGCCACGAC GAGACCGCCG AGGCGCTGCG CGAAGGCACC
AAATATTTCA TCTTCAATTT CGTCGGCGCC AGCGTGCTGT TTCTTGGCGT CACCATGCTG
GCGGCGACGA CCGGCACGTT CCAGATTGCC GAATTGGCCG CAGCCGTCGG CAAGCTGCAA
CCTGCCGCGC TGCTGGTTCC GATCAGCCTG ATCTTTGCCG GCTTCCTGAT GAAGGCCGCG
CAATTGCCGC TGCGGATCGA CTACCAGATG CACACCGTGC CGGCGCCGAC CCCGGTCTCC
GGTTATATTT CGGCGGTGCT GTTGAAGGTC GGCCCCTACG GTATTCTGAA ATTCTTCGTG
GTGCTCGGGG CAGGGACGAC CTTCGCAAAG CTCGCCGCCA TTTCGCCGTG GATGCCGAAC
CTGATGCAGG TGGTCGCGGT GGTCGCCGCG ATCACGCTGC TCTATGCCGG CGCGATGGCG
GTGGTGCAGA CCGGGATCAA GCGGCTGTTG ATCTACAGCA CCGTCAGCCA GCTCGGTTAC
ATCCTGCTGG GGATTTCGCT CGGCAGCTCG CTCGGCGTCG CCGGCGGATT GATGCACGCC
GCCAACCACA TGATGCTGAA GGACCTCTTG TTCCTGGTCG CCGGCTGCAT CCTGGCGCAG
GCCCATATCA CCAGCCTCGA CGAACTGGGC GGCTTGGGAC GGAAAATGCC GATCACCTTC
GGCATCTTCC TGTTCGCCGG GCTGTCGCTG GCCGGGATTC CGCCGCTCAA CGGCTTCGGC
TCGAAATGGC TGATCTATCA GGCGGCGTTC GACAGCGGGC ACTATCTGCT GGCGCTGGCG
GCGCTGATGT CGAGCCTGTT CACCTTGGCC GCGGTGCTGA AATTCGCCCA CACCGCTTTC
ATGGGGCAGT TGTCGCCGGT CGCGGCCGGG ATGAAGGAAG CCCCCGCGGT GATGCTGGCG
CCGATGCTGC TGCTGGTCGC AGCGAGCGTC GCGGTCGGGG TGTTTCCAGG CCTGTTATTG
GTGCCGATCG CGGGGATTCA GGCGAGCCTC GGGCTCGAGC CGATCGCGGC GAGCTGGCTT
GGCGGGCTGC CGGGATCGAG CCCGTTCAAT CCGCTGGTGC TCAGCCTTGC GCTTGTCGCC
GTCGGCCTGA TCGGCTGGCT GTACTACCGG GTCGCCGGCA GCACCAAGGT CGCGAGCTAC
GTCCACACCG GCGGCGTGAT GAATATCCCG AACGCTCGGA TGCACATGCC GGCGTCGGCA
CTCTACGAGA CGCCGGAGCG CCTGATCCGG CTGGCGCTTC GGGCCGAACC CGCGATTGAA
AGTCCCCGCC ATGATTAA
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| Protein sequence | MAHISLLGWL GLLLTLAGEV TALMQIRDLK RMLIASCIAE LGYVLMGFGV GTLTGDTGAV
MHLGYQMVMR ALLLLAAWHL IRRTGSSKLD DLVGSVERFP FVSLMFGFGM FSVMGLSPFK
GAFSKFIILY AAIENGDWLL AVGGTIASII AAVYFIRTVQ VVCFQRQSHG ILKDKPISFF
AITPRDAPMV VLALATIVMS LYPDPFLAMA ATAAGMADHS ALPEFETAWS APVLLPYVGG
FLLFVLGRFS PSLRSVGAAV IAAATFALVA FTLKSGDVGD YFALIFAGIG LAVTVYSIRY
IAHSHAINRY FFFLFVMIGS LIGVATANHL GNFYLFWELM TWSSYLLVIH EQTDKALKAG
MKYFLICSSG AYVMHLGILL LHTQLGTFEL SEIAERAPQL SPAMGWLIAA TFLVGLGAKA
GLFPLHSWLP DAHPVAPSSI SAPMSGILTK AGILGIVKLL FAVFGAASFV HLDVFGGLTA
PGVVLIVLGS VTFLIGEIQA YRQTDIKRLL AYSTLAQVGE ITMVIGVGTY LALAGALVHV
ANHAIMKTLL FFCAGALIMR AKGQTLDALK GIGRKMPFTA FCMGIGLLAI MSVPPFGGFV
GKFLMIYACV EAGQIPVAIV MLLGGVIGAM YYARILRVVF FAPYSGPAIA EAPLSMRIVL
GALAALCVVN GLYPDAVLHF ALPVVDRLAA HSELARAALP PLTMQWSLAA AIAALGAIAV
YLLGRGRPLR AGVLSVGVMA AALAGVLLQA ASYDALSFWY AAAIVAMAGV NLCYSIGYMA
HGHAQNRFFF YFLAMIAGLL GVAASGNLFS FFAFWELMSS WTLYLVISHD ETAEALREGT
KYFIFNFVGA SVLFLGVTML AATTGTFQIA ELAAAVGKLQ PAALLVPISL IFAGFLMKAA
QLPLRIDYQM HTVPAPTPVS GYISAVLLKV GPYGILKFFV VLGAGTTFAK LAAISPWMPN
LMQVVAVVAA ITLLYAGAMA VVQTGIKRLL IYSTVSQLGY ILLGISLGSS LGVAGGLMHA
ANHMMLKDLL FLVAGCILAQ AHITSLDELG GLGRKMPITF GIFLFAGLSL AGIPPLNGFG
SKWLIYQAAF DSGHYLLALA ALMSSLFTLA AVLKFAHTAF MGQLSPVAAG MKEAPAVMLA
PMLLLVAASV AVGVFPGLLL VPIAGIQASL GLEPIAASWL GGLPGSSPFN PLVLSLALVA
VGLIGWLYYR VAGSTKVASY VHTGGVMNIP NARMHMPASA LYETPERLIR LALRAEPAIE
SPRHD
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