| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4321 |
|---|
| Symbol | |
|---|
| ID | 3971509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4819587 |
|---|
| End bp | 4821425 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637927430 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_534163 |
|---|
| Protein GI | 90425793 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.103538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.169432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCT ATCGCTCCAG GACCACAACC CATGGCCGCA ATATGGCGGG TGCTCGCGGC
TTGTGGCGTG CCACCGGCAT GAAGAACGAG GATTTCGGCA AGCCGATCAT CGCGGTGGTG
AATTCCTTCA CCCAGTTCGT GCCCGGCCAC GTGCATCTGA AGGACCTCGG CCAATTGGTC
GCCCGCGAGA TCGAGAACGC CGGCGGCGTC GCCAAGGAAT TCAACACCAT CGCGATCGAT
GACGGCATCG CGATGGGCCA TGACGGCATG CTGTATTCGC TGCCGTCGCG CGAATTGATC
GCCGACAGCG TCGAATACAT GGTCAACGGC CATTGCGCCG ACGCCATGGT GTGCATCTCG
AATTGCGACA AGATCACCCC CGGCATGTTG ATGGCCTCGC TGCGGCTCAA CATTCCGACC
ATCTTCGTTT CCGGCGGCCC GATGGAAGCC GGCAAGGTCA CGGTCGGCGG CAAGAAGCGC
GCGGTCGACC TGATCGACGC CATGGTGGCG GCGGCCGATG ACCGGGTCAG CGACGCCGAC
GTCGAGGCGA TCGAGCGCTC CGCCTGTCCG ACCTGCGGCT CCTGCTCCGG CATGTTCACC
GCCAATTCGA TGAACTGCCT GACCGAGGCG CTCGGGCTGG CGCTGCCCGG CAACGGCTCG
GTGCTCGCCA CCCACGCCGA CCGCAAGGCG CTGTTCGTCG AGGCCGGCCA CCTGATCGTC
GATCTGGCCC GGCGTTACTA CGAGCAGGAC GACGAGACGG CGCTGCCGCG CAACATCGCC
AGCTTCAAGG CGTTCGAGAA CGCCATGACG CTCGACATCG CGATGGGCGG CTCGACCAAC
ACCGTGCTGC ATCTGTTGGC CGCGGCCTAT GAGGGCGAGA TCCCCTTCAC CATGCAGGAC
ATCGACCGGC TGTCGCGCCG GGTGCCGGTG CTGTGCAAGG TGGCGCCGGC GGTGGCCGAC
GTTCACGTCG AGGACGTGCA TCGCGCCGGC GGCGTGATGG GCATTCTCGG CGAACTCGAC
CGCGCCCGGC TGATCAACGC CGAACTGCCG ACCGTGCACT CGACCTCGCT CGGCGAAGCG
CTGAACCGCT GGGACGTGAT GCGCACCCAG AGCGACAGCG TGCGCAAGTT CTACAAGGCG
GCGCCCGGCG GCGTGCCGAC GCAGGTCGCG TTCAGCCAGG AGCAGCGCTA TGACGACGTC
GATACCGACC GCGCCAAAGG CTGCATCCGC GACGCCGAGC ACGCCTTCTC CAAGGACGGC
GGCCTGGCGG TGCTGTCCGG CAACCTCGCG ATCGACGGCT GCATCGTCAA GACCGCCGGC
GTCGACGCCA GCATCCTGAC CTTCCAGGGC CCGGCGCGGG TGTTCGAGAG CCAGGACGCC
GCGGTCGAAG GCATTCTCGG CGGCAAGATC ACAGCCGGCG ATATCGTGGT GATCCGCTAT
GAGGGGCCGC GCGGCGGCCC CGGCATGCAG GAAATGCTGT ATCCGACCAG CTACCTGAAA
TCGAAAGGCT TGGGCAAAGC CTGCGCGCTG ATCACCGACG GCCGGTTCTC CGGCGGCTCC
TCGGGGCTGT CGATCGGCCA CGTCTCGCCG GAAGCCGCCG AGGGTGGGCT GATCGGCCTC
GTCGAAGAGG GCGACCGCAT CGAGATCGAC ATTCCGCAGC GCTCGATTCG GCTCGCGGTC
GACGACGCCG TGCTGGCGGA ACGCCGCGTC GCCATGCTGG CGCGCAAGGA TGCTTGGAAG
CCCGGCAAGC GCAGCCGCAA GGTCACCTCG GCGCTGAAGG CCTACGCCGC GATGACCACC
AGCGCCGCCC GCGGCGCGGT GCGGGTGGTG AAGGATTAA
|
|---|
| Protein sequence | MPAYRSRTTT HGRNMAGARG LWRATGMKNE DFGKPIIAVV NSFTQFVPGH VHLKDLGQLV
AREIENAGGV AKEFNTIAID DGIAMGHDGM LYSLPSRELI ADSVEYMVNG HCADAMVCIS
NCDKITPGML MASLRLNIPT IFVSGGPMEA GKVTVGGKKR AVDLIDAMVA AADDRVSDAD
VEAIERSACP TCGSCSGMFT ANSMNCLTEA LGLALPGNGS VLATHADRKA LFVEAGHLIV
DLARRYYEQD DETALPRNIA SFKAFENAMT LDIAMGGSTN TVLHLLAAAY EGEIPFTMQD
IDRLSRRVPV LCKVAPAVAD VHVEDVHRAG GVMGILGELD RARLINAELP TVHSTSLGEA
LNRWDVMRTQ SDSVRKFYKA APGGVPTQVA FSQEQRYDDV DTDRAKGCIR DAEHAFSKDG
GLAVLSGNLA IDGCIVKTAG VDASILTFQG PARVFESQDA AVEGILGGKI TAGDIVVIRY
EGPRGGPGMQ EMLYPTSYLK SKGLGKACAL ITDGRFSGGS SGLSIGHVSP EAAEGGLIGL
VEEGDRIEID IPQRSIRLAV DDAVLAERRV AMLARKDAWK PGKRSRKVTS ALKAYAAMTT
SAARGAVRVV KD
|
|---|
| |