Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4234 |
Symbol | |
ID | 3972957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4712692 |
End bp | 4714353 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927337 |
Product | hypothetical protein |
Protein accession | YP_534077 |
Protein GI | 90425707 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0836987 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGTCGA CAGTTTCGCT GCAGCCACTC ACCGGCGCGG ACCGTCGCCG ACGTCTTCTG ATCCACCTGG CGGCCCCCGG CGTTTTTGGA TTGATCTCCC TTTTCCTCGG CGTCGACGAC AATTGGGATC TGCGCCACTA CCATCTCTAT GGCCCATTTG CGCTGTTGAA CGGCAAACTG GACATCGACT TCACGCCCGG CAGCTTCCAG ATCTACTTCA ATCCGACGCT CGATCTGGCC TACTATTTGA TGATCCGCCA CTGGCCGGCG ATGCTGGCGG GCTTCACCTG GGGCTGCGTC CATGGCCTGA ACTTCAATCT CCTGTTTGAA ATCATCCGCC GCGCTCTTCC CAACCTCCCG GAGCGCGATC GTCTGCGCGT TCCGTTCTGG CTGAGTGTCG CCGGCATCCT GACGCCGAAT TTCTTTTCCG AAATCGGCAA CACCATGGGC GACAACGCCA CGGCGCTGTT CATCCTGTCG GCGCTGCTCG TCATCCTCAC AGCGAGGCCG CGGCTGCAGG CCGCCGCGAC GGCCGCCGCG ACGGCCGCCG CCTGCTGGAT CGGGGGCGCC GGGCTGCTCG CCGGGCTCGG CATGGGTCTC AAGCTGACCA ATTGCGTCCA CGTTGCGGCG CTTGGTCTTG CCTTGTTCAT CATTCCGGTT CCCTGGACGC GCCGGCTCGC GCTCGTCGTC GCCTTCGGAC TGGGCGTGGT GGGCGGCGCG GCGATCACCG GCGGATCTTG GCATCTGACG ATGTGGCGGG CGTTCGGTAA CCCGCTATTT CCGCAGTTTA CGTCGCTATT TCCCAGCGAA TTGGCGCCGA ATTTCAGCAT TATCGACAGG TCGTTCTTGC CGACGACGAT CGGCGAGCAC CTACTGTGGC CGTTCATCTT CACCCTGGCG CCGCGGCGCA CAGGGCAGGC CAGCTTCCAT CAGGCGATCT GGGCGGTGAG CTACCTCTCG TTCTGGGTCT ACGCCGCAAC GGCCCTGATT CGGCGGTGGC ACGGCGTGGC CGCTCGACGG TTCGAGCCGC AGCAATGCTA CCTGCTGACG TTTTTCGCGA TCGCCTATCT GCTCTGGATG ATGGTGTTCA GCATCGCGCG CTATCTCGTT CCGATCGAAA TGTTGACCCC GCTCGTTGTG GTTCTGCTGC TACGGGGAAT ATTCTCGGAT CAGACCGCAC GATGGATCGC CACGCCGCTG CTGATCGCGG CGACGCTGGT GTTCGTCGCG GGCGGGGTGC GTTTCTGGGG GCATCAGCGC TGGGCCGACC CGCCCTACCG GGTCGATCGA CCGGAGCTCA CCGACGTGGC GCGAACCACC GTGCTGATCA TCAACATGGA TCCGCCGCCG ACCTGGATGA TCACCCAGTT TCCGCCACAG CTGTCCTTTG TCGGGCTCGA CCCGAGCTTC CGCACCGCCG CCCATCGTCA GAAGGTGCGC CAGCTGATCG CACATCACGG CGGGCCGCTG TTCGCGCTGT ATCAATATGG CCCCGACCCG GAGCGGCGCG GTGAGATCGA GGCGCGGGCC AAGGCGAACC TTGCCGCTTA TGGGATGGCG ATCGACATTC CCGCCTGCAC GACCTATGAC GCCTATGTCG GACAGCAGCG CACGCCCTAT CAATGGTGTG CGGTTTCCCT TGCCGACCAA GGGGCCGACT GA
|
Protein sequence | MGSTVSLQPL TGADRRRRLL IHLAAPGVFG LISLFLGVDD NWDLRHYHLY GPFALLNGKL DIDFTPGSFQ IYFNPTLDLA YYLMIRHWPA MLAGFTWGCV HGLNFNLLFE IIRRALPNLP ERDRLRVPFW LSVAGILTPN FFSEIGNTMG DNATALFILS ALLVILTARP RLQAAATAAA TAAACWIGGA GLLAGLGMGL KLTNCVHVAA LGLALFIIPV PWTRRLALVV AFGLGVVGGA AITGGSWHLT MWRAFGNPLF PQFTSLFPSE LAPNFSIIDR SFLPTTIGEH LLWPFIFTLA PRRTGQASFH QAIWAVSYLS FWVYAATALI RRWHGVAARR FEPQQCYLLT FFAIAYLLWM MVFSIARYLV PIEMLTPLVV VLLLRGIFSD QTARWIATPL LIAATLVFVA GGVRFWGHQR WADPPYRVDR PELTDVARTT VLIINMDPPP TWMITQFPPQ LSFVGLDPSF RTAAHRQKVR QLIAHHGGPL FALYQYGPDP ERRGEIEARA KANLAAYGMA IDIPACTTYD AYVGQQRTPY QWCAVSLADQ GAD
|
| |