| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4163 |
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| Symbol | |
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| ID | 3972306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4625387 |
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| End bp | 4627318 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927266 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_534007 |
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| Protein GI | 90425637 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.737802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.887363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGGA TCTCCGCTTT TACTTACCGG AACTGGCTGA TCGCGATTCA CGATGCCGGG
GTGACGGCGT TCGCGGTGAT CGCCAGTTTT TTCTTGCGGT TCCAAGGCGA GAACTTCACC
GAGCGACTGC CGCTGCTGCT GACGATTCTG CCTTATTTCG TGGTTTTCAG CTTTTTCGTC
TGTTACTTTT TCCATCTGAC CACCACCAAG TGGCGGTTCA TTTCCGTCCC CGATCTTTTG
AACATCCTGC GCGCGGCCAG CGTACTGACG GTCGCGCTGC TGGTGCTCGA TTATATCTTC
CTGGCGCCGA ACGTGTTCGG AACGTTCTTT CTCGGCAAGA CCACCATCAT CATCTATTGG
TTTCTCGAGG TGTTCTTCCT CAGCGGTTCG CGGTTGGCCT ACCGGCATTT CCGCTACACC
CGCACCCGCA ACCAGGCCAA GCTCAAGGAC GCCGCGGCGA CCTTGCTGAT CGGGCGCGCC
GCCGACACCG AAGTGTTTCT GCGCGCGGTC GAGAGCGGCG CGGTGAAGCG GCAATGGCCG
GTCGGCATCC TGTCGCCGTC CAGTTCGGAT CGCGGGCAGC TGATCCGCGG CATCCCGGTG
CTGGGCACGA TCGACGATCT GGCCAACGTG GTCGACGATT TCGCCGGCCG TAACAAGCCG
ATCAAGCTCG TGGTGATGAC GCCGTCGGCG TTCGAGAGCG AGGCGCAACC GGAATCCGTG
CTGATGCGGG CGCGCAAGTT GGGCCTCGCG GTCAGCCGGT TGCCGTCGCT GGAGGAGAGC
CGCGATACGC CGCGGCTGGC GCCGGTGGCG GTGGAGGATC TGTTGCTGCG GCCGAGCGTC
AAGATCGACT ACGCCCGGCT GGAGGCGTTC GTGCGCGGCA AATCCGTGGT GGTCACCGGC
GGCGGCGGAT CGATCGGTTT CGAGATCTGC GACCGCGTCA CCACCTTCGG CGCCGCGCGG
CTGTTGATCA TCGAGAATTC CGAACCGGCG CTGCATGCGG CGATGGAAAC CATTCTCGCC
AAGGAGCCCG CGGTGGCGGT CGAAGGCCGC ATGGCCGACG TGCGCGACCG CGATCGCATC
CACCAATTGC TGACCGCGTT CAAGCCGGAC ATCGTGTTCC ACGCCGCGGC GCTGAAGCAT
GTGCCGATCC TGGAGCGCGA CTGGGCGGAG GGCGTCAAGA CCAACATCTT CGGTTCGGTC
AACGTCGCCG ACGCCGCACT GGCGTCGGGC GCCGCCGCGA TGGTGATGAT TTCCACCGAC
AAGGCGATCC AGCCGGTGTC GATGCTGGGG CTGACCAAGC GGTTCGCCGA AATGTACTGT
CAGGCGCTGG ATCGCCAATT GATGACCGGC GCCGACGGCG GCAAGCCGCC GATGCGGCTG
ATCTCGGTGC GGTTCGGCAA CGTGTTGGCC TCGAACGGCT CGGTGGTGCC GAAGTTCAAG
GCGCAGATCG AGGCCGGCGG GCCGATCACG GTGACCCATC CGGACATGGT GCGCTACTTC
ATGACCATCC GCGAAGCCTG CGATCTGGTG ATCACGGCCG CGACTCATGC GCTCAGTCCG
GCGCGGTTCG ATGCCTCGGT CTATGTGCTG AACATGGGGC AGCCGGTGAA GATCGTCGAT
CTCGCCGAGC GGATGATCCG GCTGTCCGGG CTGCAGCCCG GCTACGACAT CGAGATCGTG
TTCACCGGGG TGCGCCCCGG CGAGCGGCTG AATGAAATCC TGTTCGCCGA GCAGGAGCCG
ATCAGCGAGA CCGGCATCGC CGGCATCGTC GCGGCCAAAC CGAACCAGCC GCCGATGGCG
TTGCTGCGGC AATGGCTGAC CCAACTCGAG CAGGGCGTCA GCAACGAAAC CTGCTCGGAG
ATCTCCGGGG TGTTGAAAGC CGCGGTGCCG GAGTTCGGCG CCGAGGCCGA GCTTCGCACC
GCGGCGCAGT GA
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| Protein sequence | MTRISAFTYR NWLIAIHDAG VTAFAVIASF FLRFQGENFT ERLPLLLTIL PYFVVFSFFV
CYFFHLTTTK WRFISVPDLL NILRAASVLT VALLVLDYIF LAPNVFGTFF LGKTTIIIYW
FLEVFFLSGS RLAYRHFRYT RTRNQAKLKD AAATLLIGRA ADTEVFLRAV ESGAVKRQWP
VGILSPSSSD RGQLIRGIPV LGTIDDLANV VDDFAGRNKP IKLVVMTPSA FESEAQPESV
LMRARKLGLA VSRLPSLEES RDTPRLAPVA VEDLLLRPSV KIDYARLEAF VRGKSVVVTG
GGGSIGFEIC DRVTTFGAAR LLIIENSEPA LHAAMETILA KEPAVAVEGR MADVRDRDRI
HQLLTAFKPD IVFHAAALKH VPILERDWAE GVKTNIFGSV NVADAALASG AAAMVMISTD
KAIQPVSMLG LTKRFAEMYC QALDRQLMTG ADGGKPPMRL ISVRFGNVLA SNGSVVPKFK
AQIEAGGPIT VTHPDMVRYF MTIREACDLV ITAATHALSP ARFDASVYVL NMGQPVKIVD
LAERMIRLSG LQPGYDIEIV FTGVRPGERL NEILFAEQEP ISETGIAGIV AAKPNQPPMA
LLRQWLTQLE QGVSNETCSE ISGVLKAAVP EFGAEAELRT AAQ
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