| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3898 |
|---|
| Symbol | |
|---|
| ID | 3969261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4327881 |
|---|
| End bp | 4330322 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637927001 |
|---|
| Product | conjugal transfer ATPase TrbE |
|---|
| Protein accession | YP_533743 |
|---|
| Protein GI | 90425373 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATC TTTCGGAGTA TCGGCACTCG ACGACATGCC TCGCCGACTT TCTGCCCTGG
GCCGCGTTGG TCGGTCAGGG CGTGGTGTTG AACAAGGACG GATCTTTCCA GCGAACCGCA
ACGTTTCGCG GGCCGGACCT GGATTCCGCC GTGCCGGCCG AACTGGTCGG TATTACGGCA
CGCTTGAACA ATGCCTTGCG CCGGCTGGGG TCGGGATGGG CCGTGTTCGT CGAGGCGCAG
CGCCATCCCG CGAGCAAATA TCCCGAGTGC CATTTTCCGG ATGCTGCATC GGCTTTAGTT
GATCTCGAGC GCCGCGCTCA GTTCGAGGAG GAGGGCGCGC ACTTCGAATC CAGCTACTTC
CTGACTTTCC TCTATCTGCC GCCGGCCGCC GATGTCGCGC GCGCCGAGCG CTTGCTGTAC
GAGGGGCGCG ATCGCGACGA AGGCACCGAT GCACGCGAGA TATTGGGCGG TTTCGTCGAT
CGCACCGACC GGGTGCTTCA ACTGGTCGAG GGTTTTATGC CCGAGAGCGC TTGGCTCGAT
GACCAGGACA CCCTGACCTA TCTGCATTCC ACGATCTCGA CCAAGCGCTA CCGGATCAGG
GTTCCGGAAA CGCCGATGTA TCTCGATGCA CTGCTGGCCG ACCAGCCGCT GACCGGTGGG
TTGGAGCCGA TGCTCGGCAA TGCGCATCTG CGGGTGCTGA CCATCGTGGG TTTCCCGACC
ACCACCACTC CCGGCATCCT CGACGAATTG AATGCACTGG CCTTCGCCTA TCGCTGGTCG
ACCCGCGCCA TCATGCTCGA CAAGACCGAC GCCACAAAGC TGTTGACGAA GATTCGGCGG
CAGTGGTTCG CCAAGCGCAA ATCGATTGCG GCCATCCTCA AGGAGGTGAT GACCAACGAG
GCCGCGACCC TGGTCGATAC CGACGCCCAG AACAAGGCGA TGGATGCGGA CGCGGCGTTG
CAGGAACTCG GGTCCGACGC GATCGGGCAG GCCTTTGTCA CAGCAACGGT CGCGGTATGG
GACGGCGACC CGCGTGCCGC TGACGAAAAG CTCCGCCTTG TAGAGAAAGT AATTCAAGGC
CGCGACTTCA CCTGCATGGC TGAGAGCGTC AACGCCGTCG AAGCCTGGCT CGGATCGCTG
CCAGGTCACG CCTACGCCAA TGTTCGCCAG CCGCCGGTTT CGACGCTGAA TCTGGCCCAC
ATGATTCCGC TCTCGGCGGT ATGGGCCGGA CCGCTCCGAG ACGATCATTT TGATGCTCCG
CCGCTGTTCT TTGCCCGCAC CGAGGGCGCG ACCCCGTTCC GGTTTTCGCT GCACGTTGGC
GATGTTGGGC ATACGCTGGT CGTCGGTCCG ACCGGCGCCG GCAAGAGTGT GCTGCTGGCG
CTGATGGCGC TGCAGTTCCG GCGTTACGCC GGTTCACAGG TGTTCGCTTT CGATTTCGGC
GGCTCGATCC GGGCCGCCGC GCTCGCGATG GGCGGCGATT GGCACGATCT CGGTGGCGCG
CTCTCCGACA ATGCGACCGA ACCGGTCGCG CTGCAGCCGC TGGCTCTGAT CGATGACGCC
GCGGAGCGCG GATGGGCGGC GGAATGGATC GGCAACATTT TGGCGCGTGA GACCATCCGG
ATCACCCCGG AAGCGAAAGA GCATCTGTGG TCGGCGCTGT CGTCGCTGGC GTCTGCGCCG
GCACCGGAGC GCACGCTGAC CGGCCTGTCA GTGCTGCTGC AGTCGCAGAC TCTGAAGCGC
GCGCTGCAAT CCTATTGCCT CGGCGGTCCC TACGGCCGGC TGCTCGATGC CGAGGCTGAA
CGGCTGGGTG AGGGCGCAGT CCAGGCCTTC GAGACCGAGG GGCTGATCGG CACCAGCGCC
GCGCCCGCGG TGCTCGGCTA TCTGTTTCAT CGCATTGAGC GGCGGCTCGA TGGCCGGCCG
ACCTTGTTGA TCATCGACGA AGGCTGGCTC GCGCTTGATG ACGAGGGCTT TGCCGGCCAG
CTTCGCGAGT GGCTAAAGAC GCTGCGCAAG AAGAACGCTT CGGTAATCTT CGCCACCCAA
TCACTATCGG ACATCGATGG CTCGGCGATC GCACCGGCCA TCATCGAGAG CTGTCCGACA
AGGTTGTTCC TGCCCAACGA GCGCGCGATC GAACCGCAGA TCACCGCGAT CTATCGCCGC
TTCGGCCTGA ACGACCGCCA GATCGAGATC CTGGCCCGGG CCACGCCAAA GCGCGATTAC
TACTGCCAGT CGCGGCGCGG CAACCGGCTG TTCGAGCTTG GCCTCGGCGG TGTCGCGCTG
GCTTTGGCGG CCGCGTCCTC GAAGGCCGAT CATACCTTGA TCGAGAGCGT CATCGCCGAA
CATGGCCGTG ACGGCTTCCT CGCCGCCTGG CTGACCCAGC GCGGCGCCGG CTGGGCGGTC
GATTTCATCC CAAGGCTTTC CACAAAGGAG CCGTCAGCAT GA
|
|---|
| Protein sequence | MMNLSEYRHS TTCLADFLPW AALVGQGVVL NKDGSFQRTA TFRGPDLDSA VPAELVGITA
RLNNALRRLG SGWAVFVEAQ RHPASKYPEC HFPDAASALV DLERRAQFEE EGAHFESSYF
LTFLYLPPAA DVARAERLLY EGRDRDEGTD AREILGGFVD RTDRVLQLVE GFMPESAWLD
DQDTLTYLHS TISTKRYRIR VPETPMYLDA LLADQPLTGG LEPMLGNAHL RVLTIVGFPT
TTTPGILDEL NALAFAYRWS TRAIMLDKTD ATKLLTKIRR QWFAKRKSIA AILKEVMTNE
AATLVDTDAQ NKAMDADAAL QELGSDAIGQ AFVTATVAVW DGDPRAADEK LRLVEKVIQG
RDFTCMAESV NAVEAWLGSL PGHAYANVRQ PPVSTLNLAH MIPLSAVWAG PLRDDHFDAP
PLFFARTEGA TPFRFSLHVG DVGHTLVVGP TGAGKSVLLA LMALQFRRYA GSQVFAFDFG
GSIRAAALAM GGDWHDLGGA LSDNATEPVA LQPLALIDDA AERGWAAEWI GNILARETIR
ITPEAKEHLW SALSSLASAP APERTLTGLS VLLQSQTLKR ALQSYCLGGP YGRLLDAEAE
RLGEGAVQAF ETEGLIGTSA APAVLGYLFH RIERRLDGRP TLLIIDEGWL ALDDEGFAGQ
LREWLKTLRK KNASVIFATQ SLSDIDGSAI APAIIESCPT RLFLPNERAI EPQITAIYRR
FGLNDRQIEI LARATPKRDY YCQSRRGNRL FELGLGGVAL ALAAASSKAD HTLIESVIAE
HGRDGFLAAW LTQRGAGWAV DFIPRLSTKE PSA
|
|---|
| |