| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3626 |
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| Symbol | |
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| ID | 3970641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 4032304 |
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| End bp | 4034409 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926734 |
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| Product | glycogen debranching protein GlgX |
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| Protein accession | YP_533480 |
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| Protein GI | 90425110 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0135941 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAAAC AAACTGTCGG CGAAGGCCTT CCCTTCCCGC TGGGTGCCAG TTGGGACGGC
AAGGGAACGA ATTTCGCGCT GTTCTCGGCG CATGCCACCA AGGTGGAGAT CTGCCTATTC
GACGGCGATC AGGAACGCCG CTACGAACTG CCGGAATATA CCGACGAGAT CTTCCACGGC
TATCTGCCCG ACGTCGGCCC CGGTTGCTTC TATGGCTACC GGGTCTACGG CCCTTACGAG
CCGGAAAACG GCCACCGCTT CAACCCAAAC AAGCTGTTGC TCGACCCTTA CGCCCGCGCC
CATGCCGGCG AGATGAAATG GGATCCGGCG GTGTTCGGCT ACACGATGGA AAGCGGCGAC
GACCGCACCT TCGACACCCG CGACAGCGCG CCGTTCGTGC CGAAATGCGT GGTGGTCGAT
CCGAATTACG ACTGGAAGGG TGAGCCCGGC CGACGCAATA CGCCGTGGGA TCAGACCGTG
ATCTACGAGG CCCACGTCAA GGGCTTCACG AAGCTGCATC CCGACGTCCC CGAGCATCTG
CGCGGCACCT ATGCGGGCTT CGGCAGCCAG CCGATCATCG ATCACATCGC TTCGTTGGGC
GTCAGCGCGG TCGAGCTGTT GCCGATCCAC ACCTTCATCA ACGACGATAA TCTGCTCGAC
AAGGGGCTGA CCAATTATTG GGGCTACAAC ACCATCGGCT TCTTCGCCCC CGACCCGCGC
TACGCCTCCG ACGTGCCCAA CAGCCTGCGC GAATTCAAGG AGATGGTGGC GCGGCTGCAT
AGCGGCGGCC TCGAGGTGAT CCTCGACGTG GTCTATAACC ACACCGCCGA GGGCAGCGAG
CTTGGCCCGA CGCTGTCGTT CAAGGGCATC GACAACGCCA GCTACTATCG GCTTCTGCCG
GACAAGAAGC GCTACTACAT CAACGACACC GGCACCGGCA ACACCGTCAA CCTGTCGAAT
CCGCGGGTAA TCCAGATGGT CGCCGACTCG TTGCGCTACT GGTCGAACGA GATGCACATC
GACGGCTTCC GCTTCGACCT CGGCACCATT CTGGCCCGCG AGGTCTACGG CTTCGACGAG
CAGAGCGGAT TTCTCAAGGC AGTCGATCAG GATCCGGTGC TGACCTCGGT CAAGCTGATC
GCCGAACCCT GGGACATCGG CCCCGGCGGC TACCAGGTCG GCGGCTTCCC GCCGGGCTGG
GCGGAATGGA ACGACAAATT CCGCGACACC GCGCGCGATT TCTGGCGCGG CGAAGCCGAC
GTCGCGACGC TGGTGCCGCG GCTGTCGGGC TCGGGCGATC TGTTCAACCA TCAGGGCCGT
CGCGCCTGGG CCAGCATCAA CTTCGTCACC GCGCACGACG GCTTCACGCT GAACGATTGG
GCGAGCTACA ACGACAAGCA CAACGAGGCC AATGGCGAGG AGAATCGCGA CGGCTCGTCG
TCGAACCGCT CCTGGAACTG CGGCGTCGAA GGCCCGACCG AGGACAAGGA CATCCTGGCG
CTACGCGAAC GCCAGAAGCG CAACATGCTC GGCACGCTGC TGCTGTCGCA GGGCACGCCG
ATGTTGCTGG CGGGCGACGA ATTCGCCCGC ACCCAACACG GCAACAACAA TGCCTATTGC
CAGGACAGCG AGATCTCATG GATCGATTGG AACTTGGGCG ACGACGCCAA GGATCTGTTG
AGCTTCACCA AGCGGTTGAT CGAGCTGCGC AAGGCCTATC CGACGCTGCG CCGCAGCCGG
TTCCTGACCG GCCAGCACGA TCCGCAACTC GACGTCTGCG ACGTGATCTG GATCAACGCC
AATGGTGCGC CGATGCAGGA CGAGCAGTGG CAAGACACCA CGATGAAGAG CTTCGGAATG
CTGCTCGACG GCCGCGCGCA AAAGACCGGC ATCCGCAAGC ACGGCGAGGA CGAGACCGTG
CTGTTGGTGA TGAATTCGTT CGACGGCGTG GTAGACTTCA TCCTGCCGGA GACGCCGCAT
GGCAGCAAAT GGGCGCTGCT GATCGACAGC AACATTCCCG ACGGCGCGCC GGGCGCGGAA
TTTCCGTGCG GGGCGATGTA TCAGGTCACC GGGCGTTCGC TGCTGCTGTT CACGCTCGGC
ATGTGA
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| Protein sequence | MSKQTVGEGL PFPLGASWDG KGTNFALFSA HATKVEICLF DGDQERRYEL PEYTDEIFHG
YLPDVGPGCF YGYRVYGPYE PENGHRFNPN KLLLDPYARA HAGEMKWDPA VFGYTMESGD
DRTFDTRDSA PFVPKCVVVD PNYDWKGEPG RRNTPWDQTV IYEAHVKGFT KLHPDVPEHL
RGTYAGFGSQ PIIDHIASLG VSAVELLPIH TFINDDNLLD KGLTNYWGYN TIGFFAPDPR
YASDVPNSLR EFKEMVARLH SGGLEVILDV VYNHTAEGSE LGPTLSFKGI DNASYYRLLP
DKKRYYINDT GTGNTVNLSN PRVIQMVADS LRYWSNEMHI DGFRFDLGTI LAREVYGFDE
QSGFLKAVDQ DPVLTSVKLI AEPWDIGPGG YQVGGFPPGW AEWNDKFRDT ARDFWRGEAD
VATLVPRLSG SGDLFNHQGR RAWASINFVT AHDGFTLNDW ASYNDKHNEA NGEENRDGSS
SNRSWNCGVE GPTEDKDILA LRERQKRNML GTLLLSQGTP MLLAGDEFAR TQHGNNNAYC
QDSEISWIDW NLGDDAKDLL SFTKRLIELR KAYPTLRRSR FLTGQHDPQL DVCDVIWINA
NGAPMQDEQW QDTTMKSFGM LLDGRAQKTG IRKHGEDETV LLVMNSFDGV VDFILPETPH
GSKWALLIDS NIPDGAPGAE FPCGAMYQVT GRSLLLFTLG M
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