| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3292 |
|---|
| Symbol | |
|---|
| ID | 3972557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3645125 |
|---|
| End bp | 3646417 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926403 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_533153 |
|---|
| Protein GI | 90424783 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.330767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGGAC TGACGGGCAA CACGCCGCCG ACCGGATCTC CCGCCCCCGA CAACAAACTG
ATCTCCCGCT CGATGCTGCT GGTGCTGGTG GCGATGACCG GCGCCGCGCC GGTCGCGATG
TATATTCTGG TGCCGGCGCT GCCGATGCTG GCGCGCGACT TCAGCCGCGA CATCTCGATC
GCGCAGATGA CGGTGTCGCT GTTCATGGTC GGCATCGCGT TTTCGCAGGT GGTGCTCGGG
CCGTTGTCGG ACAAGCTCGG CCGCCGGCCG GTGATGCTCG GCGGGATGGC GCTGATGATG
CTGGCGAGCG TCGGCTGCAT CTTCGCCGAA ACCTTGCCGC AACTGATCGC CGCGCGATTC
CTGCAGGCGC TCGGCGGCGC CTGCGGCATG GTAATCGGCC GTGCCATCAT CCGCGACCTC
TATCCGCGCG AGCGCGTCGG CAGCATGATC AGCCTGGTGG TCGCGGTGAT GATGATCGCG
CAGATGCTGA GCCCGCTGCT CGGCGGCGTG CTGGAAATCA GCCTCGGCTG GCGCGCGATC
TTCTACGTCC TCGCGCTGGT TTCGGTGCTG GTCACCATTC TGGTTGCGGT GGCGCTACCG
GAAACGCGGC GCGCCGCCGA TCGGCTGCCC GGCGCGAGCT TTTTGTCGGA CGCCCGCAGC
CTGACCACCA GCCGCGCCTT CGTCGGCTAT GTGCTGTGCC AGGTGCTGGC GTCCTCGATC
ATCTTCACCT TCGCCGGCGG CGGGCCCTAT GTGGTGGTGA TGCAGATGCA CCGCTCTCCC
GCCGAATACG GCGCCTGGTT CGCCACCTCC GGCCTCGCTT ATCTAATCGG CAATCTCGGC
TGCGTGCGGT TTTCGCCGCG GCACTCCCTG GAACGATTGA TCTGGTTCGG CCTCGCGCTG
CAATTGCTCG GCGCCGCGCT GAACCTGATC TGGGGTCTGC TCGGCTACAA TCAGCAGCCG
AGCTGGCTGT TCGGCACCCA CATGCTGATC ACCTTCGCCA CCGCCTTCGT GCTGTCGAAT
TCCGCCGCCG GCGCCATCAG CGTCAAGCCG GAGGCCGCCG GCACCGCCTC GGGACTGATG
GGATTTCTGC AGATGGGGTT CGGCGCGCTG TGCTCGCAAT TCGGCGCCTG GCTCGGCGGC
CACTTCGCCA CGCCCGTTCC GCTCAACATC GCGCTGGTGG TGCTGTCCTT GGCCTGCGCG
GCCTCGATGA TCTTCCTGGT GCCGCGCGGC GGCGCGCTCG CCACCGAGGA TCTGATCGAG
AAGGCCGAGG AAGAAGAGAC CGGGTTGTTG TAG
|
|---|
| Protein sequence | MHGLTGNTPP TGSPAPDNKL ISRSMLLVLV AMTGAAPVAM YILVPALPML ARDFSRDISI
AQMTVSLFMV GIAFSQVVLG PLSDKLGRRP VMLGGMALMM LASVGCIFAE TLPQLIAARF
LQALGGACGM VIGRAIIRDL YPRERVGSMI SLVVAVMMIA QMLSPLLGGV LEISLGWRAI
FYVLALVSVL VTILVAVALP ETRRAADRLP GASFLSDARS LTTSRAFVGY VLCQVLASSI
IFTFAGGGPY VVVMQMHRSP AEYGAWFATS GLAYLIGNLG CVRFSPRHSL ERLIWFGLAL
QLLGAALNLI WGLLGYNQQP SWLFGTHMLI TFATAFVLSN SAAGAISVKP EAAGTASGLM
GFLQMGFGAL CSQFGAWLGG HFATPVPLNI ALVVLSLACA ASMIFLVPRG GALATEDLIE
KAEEEETGLL
|
|---|
| |